Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 H 1.09003 * 115.71405 * 30.55137 * 12 11 10 14 14 O 1.42901 * 117.77134 * 243.60728 * 12 11 10 15 15 C 1.42897 * 64.73135 * 253.15697 * 14 12 11 16 16 H 1.08999 * 117.77248 * 253.15959 * 15 14 12 17 17 C 1.52998 * 117.77141 * 106.84129 * 15 14 12 18 18 O 1.42908 * 109.47163 * 118.98056 * 17 15 14 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 23 23 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 24 24 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 25 25 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 26 26 H 1.09003 * 109.47523 * 238.97814 * 17 15 14 27 27 H 1.08996 * 109.47380 * 358.98659 * 17 15 14 28 28 H 0.96698 * 114.00426 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 1 3.4247 -5.9603 0.4974 14 8 2.4798 -7.0209 -1.1349 15 6 1.9097 -7.5709 0.0544 16 1 2.4847 -8.3251 0.5915 17 6 0.3891 -7.7320 0.1075 18 8 0.0620 -9.1133 0.2725 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.8719 -3.6044 -0.8906 23 1 2.8719 -3.6044 0.8894 24 1 0.8533 -5.0451 0.8886 25 1 0.8539 -5.0446 -0.8913 26 1 -0.0076 -7.1618 0.9475 27 1 -0.0479 -7.3636 -0.8206 28 1 -0.8878 -9.2904 0.3140 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388107546.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -83.027485 kcal Electronic energy + Delta-G solvation = -10989.942348 eV Core-core repulsion = 8813.666994 eV Total energy + Delta-G solvation = -2176.275354 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.44902 -36.65167 -34.49109 -32.18852 -29.06978 -27.83398 -24.57738 -22.91122 -20.49596 -20.00242 -17.72425 -16.39492 -16.12545 -15.26903 -15.07296 -14.47176 -14.35159 -13.54471 -13.00399 -12.42420 -12.05814 -11.50347 -11.32502 -10.90136 -10.69268 -10.58471 -10.38531 -10.28667 -9.86971 -9.66219 -9.27916 -9.03832 -8.35030 -6.00433 -4.02747 3.33355 3.37151 3.37683 3.40507 3.99413 4.43674 4.45854 4.84838 4.98423 5.12945 5.35138 5.37575 5.41328 5.55230 5.89166 5.90839 6.18137 6.34783 6.70300 6.82733 7.09855 7.43041 7.66177 7.80686 7.99413 8.42291 9.04122 9.61288 11.10923 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.088492 B = 0.006476 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.337307 B = 4322.900293 C = 4552.004632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.013 3.987 13 H 0.126 0.874 14 O -0.355 6.355 15 C -0.022 4.022 16 H 0.126 0.874 17 C 0.089 3.911 18 O -0.574 6.574 19 H 0.261 0.739 20 H 0.016 0.984 21 H 0.015 0.985 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -12.414 2.322 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.149 4.149 12 C -0.044 4.044 13 H 0.144 0.856 14 O -0.275 6.275 15 C -0.079 4.079 16 H 0.144 0.856 17 C 0.011 3.989 18 O -0.380 6.380 19 H 0.070 0.930 20 H 0.035 0.965 21 H 0.034 0.966 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.976 -12.391 1.957 12.583 hybrid contribution -0.101 1.001 -0.189 1.024 sum 0.875 -11.390 1.768 11.559 Atomic orbital electron populations 1.69954 1.06059 1.26706 1.50861 1.25032 0.94865 0.99274 0.95325 0.86649 0.79580 0.83093 0.78631 1.21290 1.20225 1.20248 1.21234 0.93041 0.91127 1.50609 0.92720 1.19101 0.94004 0.91329 0.97225 1.21638 0.99198 0.93184 1.00631 1.21710 0.97022 0.93456 1.02739 1.24221 1.01259 0.87854 0.91048 0.85643 1.91689 1.80914 1.35195 1.19695 1.23428 0.94296 0.97399 0.92763 0.85649 1.21983 0.93082 0.82607 1.01183 1.86415 1.29500 1.25308 1.96771 0.92954 0.96533 0.96613 0.93128 0.92980 0.90428 0.91215 0.91269 0.92276 0.76939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 15 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 15 10 C -0.11 -2.21 5.12 -26.73 -0.14 -2.34 15 11 C -0.11 -1.84 4.70 -26.73 -0.13 -1.97 15 12 C 0.01 0.19 6.60 -26.73 -0.18 0.02 15 13 H 0.13 1.64 8.09 -51.93 -0.42 1.22 15 14 O -0.35 -6.09 14.42 -35.23 -0.51 -6.60 15 15 C -0.02 -0.29 6.93 -26.74 -0.19 -0.48 15 16 H 0.13 1.52 8.14 -51.93 -0.42 1.09 15 17 C 0.09 1.06 6.57 37.16 0.24 1.30 15 18 O -0.57 -6.41 13.66 -35.23 -0.48 -6.89 15 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 20 H 0.02 0.44 8.14 -51.92 -0.42 0.01 15 21 H 0.02 0.43 8.14 -51.93 -0.42 0.00 15 22 H 0.05 1.05 8.14 -51.93 -0.42 0.62 15 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.08 1.17 7.77 -51.93 -0.40 0.76 15 25 H 0.07 1.20 8.13 -51.93 -0.42 0.78 15 26 H 0.07 0.71 7.74 -51.93 -0.40 0.31 15 27 H 0.06 0.73 8.13 -51.93 -0.42 0.30 15 28 H 0.38 2.35 9.12 45.56 0.42 2.77 15 LS Contribution 247.43 15.07 3.73 3.73 Total: -1.00 -32.54 247.43 -5.78 -38.32 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -3.31 Total: -2.30 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -0.93 Total: -16.73 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.99 Total: -13.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.54 -5.78 -38.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388107546.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.703 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds