Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 H 1.09003 * 115.71405 * 30.55137 * 12 11 10 14 14 O 1.42901 * 117.77134 * 243.60728 * 12 11 10 15 15 C 1.42897 * 64.73135 * 253.15697 * 14 12 11 16 16 H 1.08999 * 117.77248 * 253.15959 * 15 14 12 17 17 C 1.52998 * 117.77141 * 106.84129 * 15 14 12 18 18 O 1.42908 * 109.47163 * 118.98056 * 17 15 14 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 23 23 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 24 24 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 25 25 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 26 26 H 1.09003 * 109.47523 * 238.97814 * 17 15 14 27 27 H 1.08996 * 109.47380 * 358.98659 * 17 15 14 28 28 H 0.96698 * 114.00426 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 1 3.4247 -5.9603 0.4974 14 8 2.4798 -7.0209 -1.1349 15 6 1.9097 -7.5709 0.0544 16 1 2.4847 -8.3251 0.5915 17 6 0.3891 -7.7320 0.1075 18 8 0.0620 -9.1133 0.2725 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.8719 -3.6044 -0.8906 23 1 2.8719 -3.6044 0.8894 24 1 0.8533 -5.0451 0.8886 25 1 0.8539 -5.0446 -0.8913 26 1 -0.0076 -7.1618 0.9475 27 1 -0.0479 -7.3636 -0.8206 28 1 -0.8878 -9.2904 0.3140 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388107546.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -107.955509 kcal Electronic energy + Delta-G solvation = -10991.023308 eV Core-core repulsion = 8813.666994 eV Total energy + Delta-G solvation = -2177.356314 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.60968 -37.51538 -36.32207 -34.15827 -30.48381 -29.26500 -26.26983 -24.31468 -22.19759 -21.24080 -18.66867 -18.42762 -17.32066 -16.59770 -16.31615 -16.20681 -15.69006 -14.82241 -14.41255 -14.03700 -13.80352 -13.21456 -12.78536 -12.69708 -12.47122 -12.11305 -11.77016 -11.58220 -11.30385 -11.24765 -11.05370 -10.69737 -10.53940 -8.19620 -6.30459 1.40557 1.43452 1.51322 2.30688 2.41994 2.98491 3.13500 3.42102 3.76234 4.01989 4.10235 4.19577 4.30816 4.42056 4.61265 4.81196 4.82361 4.96817 5.12529 5.22642 5.27125 5.53627 5.77240 5.86962 6.26257 6.82400 6.86635 7.38672 8.91901 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.088492 B = 0.006476 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.337307 B = 4322.900293 C = 4552.004632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.098 4.098 11 C -0.102 4.102 12 C 0.012 3.988 13 H 0.146 0.854 14 O -0.392 6.392 15 C -0.011 4.011 16 H 0.143 0.857 17 C 0.089 3.911 18 O -0.586 6.586 19 H 0.264 0.736 20 H 0.000 1.000 21 H -0.013 1.013 22 H 0.042 0.958 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -12.706 3.058 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.208 1.208 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.136 4.136 11 C -0.140 4.140 12 C -0.044 4.044 13 H 0.164 0.836 14 O -0.313 6.313 15 C -0.068 4.068 16 H 0.161 0.839 17 C 0.011 3.989 18 O -0.396 6.396 19 H 0.072 0.928 20 H 0.018 0.982 21 H 0.006 0.994 22 H 0.061 0.939 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.770 -12.704 2.698 13.108 hybrid contribution -0.411 1.040 -0.417 1.194 sum 1.359 -11.664 2.281 11.962 Atomic orbital electron populations 1.70083 1.07744 1.27821 1.51673 1.25984 0.95800 1.03349 0.94763 0.85517 0.78298 0.78162 0.79176 1.20821 1.18946 1.19463 1.21722 0.93611 0.92574 1.50561 0.92223 1.19031 0.94508 0.93008 0.94991 1.21444 0.98139 0.93093 1.00874 1.21541 0.97101 0.92313 1.03015 1.24160 1.01827 0.87731 0.90687 0.83646 1.91668 1.81560 1.36582 1.21479 1.23814 0.95561 0.96640 0.90782 0.83931 1.21969 0.92015 0.83334 1.01568 1.86360 1.31791 1.24703 1.96731 0.92766 0.98178 0.99423 0.93899 0.91605 0.88742 0.92476 0.89366 0.93184 0.74472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.46 15 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 15 3 Si 0.96 44.26 29.54 68.60 2.03 46.29 15 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 5 H -0.26 -11.57 7.11 99.48 0.71 -10.87 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.55 -31.22 9.11 25.60 0.23 -30.98 15 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 15 9 C 0.02 1.13 4.97 29.85 0.15 1.28 15 10 C -0.10 -3.92 5.12 30.59 0.16 -3.76 15 11 C -0.10 -3.27 4.70 30.59 0.14 -3.13 15 12 C 0.01 0.34 6.60 30.59 0.20 0.54 15 13 H 0.15 3.42 8.09 -2.39 -0.02 3.40 15 14 O -0.39 -13.03 14.42 -148.98 -2.15 -15.18 15 15 C -0.01 -0.29 6.93 30.59 0.21 -0.07 15 16 H 0.14 3.06 8.14 -2.39 -0.02 3.04 15 17 C 0.09 1.93 6.57 71.98 0.47 2.40 15 18 O -0.59 -11.75 13.66 -148.98 -2.04 -13.79 15 19 H 0.26 15.07 8.31 -92.71 -0.77 14.30 15 20 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 15 21 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 15 22 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.09 2.68 7.77 -2.39 -0.02 2.66 15 25 H 0.06 1.96 8.13 -2.39 -0.02 1.94 15 26 H 0.09 1.58 7.74 -2.39 -0.02 1.56 15 27 H 0.05 1.18 8.13 -2.39 -0.02 1.16 15 28 H 0.40 4.04 9.12 -74.06 -0.68 3.37 15 Total: -1.00 -69.15 247.43 0.62 -68.53 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 0.46 Total: 3.94 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 2.03 Total: -33.33 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -4.18 Total: -28.96 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.15 0.62 -68.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388107546.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.427 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds