Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47138 * 300.00058 * 3 2 1 6 6 H 1.48503 * 109.46985 * 59.99992 * 3 2 1 7 7 C 1.38641 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00217 * 179.97438 * 7 2 1 9 9 O 1.34931 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.42900 * 116.99658 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47049 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.46892 * 65.00124 * 11 10 9 13 13 C 1.42902 * 113.99903 * 180.02562 * 12 11 10 14 14 C 1.53786 * 113.61284 * 209.99760 * 13 12 11 15 15 C 1.53781 * 87.17350 * 220.06071 * 14 13 12 16 16 C 1.53782 * 87.08260 * 25.39213 * 15 14 13 17 17 H 0.97001 * 120.00135 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47065 * 60.00227 * 10 9 7 19 19 H 1.09002 * 109.47322 * 299.99414 * 10 9 7 20 20 H 1.08998 * 109.46970 * 305.00742 * 11 10 9 21 21 H 1.08997 * 109.47169 * 185.00066 * 11 10 9 22 22 H 1.08993 * 112.90736 * 341.24804 * 13 12 11 23 23 H 1.09002 * 113.61357 * 105.46987 * 14 13 12 24 24 H 1.09002 * 113.61608 * 334.65149 * 14 13 12 25 25 H 1.09001 * 113.61695 * 139.93969 * 15 14 13 26 26 H 1.08997 * 113.61223 * 270.84552 * 15 14 13 27 27 H 1.08997 * 113.61668 * 89.11298 * 16 15 14 28 28 H 1.08998 * 113.61674 * 219.93807 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2007 0.0001 9 8 1.3343 -2.3692 0.0005 10 6 2.1126 -3.5676 0.0005 11 6 1.1806 -4.7810 0.0012 12 8 0.4385 -4.8122 -1.2196 13 6 -0.4676 -5.9126 -1.3210 14 6 -0.7013 -6.3870 -2.7651 15 6 -2.1816 -6.5623 -2.3872 16 6 -1.9498 -5.4964 -1.3032 17 1 -0.4850 0.8400 0.0004 18 1 2.7414 -3.5925 0.8905 19 1 2.7414 -3.5925 -0.8895 20 1 0.4921 -4.7098 0.8432 21 1 1.7712 -5.6927 0.0908 22 1 -0.2326 -6.7208 -0.6286 23 1 -0.1977 -7.3237 -3.0039 24 1 -0.5303 -5.6121 -3.5124 25 1 -2.8723 -6.2468 -3.1692 26 1 -2.4161 -7.5485 -1.9866 27 1 -2.1199 -4.4771 -1.6497 28 1 -2.4552 -5.7135 -0.3622 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400738205.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = -88.364267 kcal Electronic energy + Delta-G solvation = -11333.201171 eV Core-core repulsion = 9156.694397 eV Total energy + Delta-G solvation = -2176.506774 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.13502 -38.40480 -36.70765 -33.93290 -30.58804 -26.64905 -26.53183 -25.46346 -23.28905 -20.52408 -19.72405 -18.19757 -17.49980 -16.50671 -16.16935 -15.77726 -15.50748 -14.99803 -14.46601 -13.74134 -13.37223 -13.22360 -12.95958 -12.82557 -12.40514 -12.09899 -11.80316 -11.64030 -11.53288 -11.28169 -11.18678 -10.28102 -10.16306 -8.17684 -5.88276 1.38699 1.45574 1.56342 2.33256 2.86485 3.15636 3.65627 3.74734 3.78350 3.95123 4.01815 4.23766 4.34640 4.48652 4.68368 4.81097 4.83102 4.87029 4.91776 5.03926 5.04785 5.22009 5.26834 5.45259 6.20351 6.49020 7.24383 8.06375 9.07963 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065394 B = 0.008303 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.071622 B = 3371.310550 C = 3616.735680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.010 2.990 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.383 4.383 8 H 0.074 0.926 9 O -0.334 6.334 10 C 0.061 3.939 11 C 0.075 3.925 12 O -0.398 6.398 13 C 0.044 3.956 14 C -0.135 4.135 15 C -0.122 4.122 16 C -0.170 4.170 17 H 0.260 0.740 18 H 0.055 0.945 19 H 0.029 0.971 20 H 0.043 0.957 21 H 0.095 0.905 22 H 0.109 0.891 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 -12.704 -2.224 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.238 4.238 3 Si 0.832 3.168 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.092 0.908 9 O -0.250 6.250 10 C -0.016 4.016 11 C -0.001 4.001 12 O -0.317 6.317 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.159 4.159 16 C -0.208 4.208 17 H 0.069 0.931 18 H 0.073 0.927 19 H 0.047 0.953 20 H 0.062 0.938 21 H 0.113 0.887 22 H 0.126 0.874 23 H 0.112 0.888 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.286 -12.493 -2.366 12.718 hybrid contribution 0.415 0.775 0.259 0.917 sum 0.129 -11.718 -2.107 11.907 Atomic orbital electron populations 1.70235 1.07775 1.27136 1.53433 1.26320 0.96789 1.02238 0.98431 0.84642 0.78025 0.76153 0.78018 1.17908 1.20166 1.19846 1.21455 0.90966 0.83728 1.49990 0.90818 1.85641 1.33944 1.11909 1.93528 1.22502 0.93726 0.86307 0.99101 1.22591 0.93973 0.96729 0.86822 1.88080 1.56232 1.48970 1.38453 1.24137 0.88727 0.89176 0.99337 1.23179 0.97252 1.01568 0.95268 1.22643 0.95911 0.99280 0.98081 1.23516 0.97118 0.99515 1.00632 0.93095 0.92693 0.95291 0.93825 0.88689 0.87369 0.88810 0.91265 0.90314 0.87372 0.92540 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.87 13.67 21.61 0.30 -62.58 15 2 C -0.05 -2.79 5.49 84.83 0.47 -2.32 15 3 Si 1.01 46.77 29.55 68.60 2.03 48.79 15 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.38 -23.92 9.89 67.92 0.67 -23.25 15 8 H 0.07 4.25 7.77 -2.91 -0.02 4.22 15 9 O -0.33 -20.93 9.74 -77.36 -0.75 -21.69 15 10 C 0.06 2.85 6.40 71.98 0.46 3.31 15 11 C 0.08 2.90 6.16 71.98 0.44 3.34 15 12 O -0.40 -16.80 10.32 -144.34 -1.49 -18.29 15 13 C 0.04 1.34 4.32 31.18 0.13 1.47 15 14 C -0.14 -3.43 7.91 31.12 0.25 -3.19 15 15 C -0.12 -2.67 8.08 31.12 0.25 -2.42 15 16 C -0.17 -5.17 7.92 31.18 0.25 -4.92 15 17 H 0.26 16.04 8.31 -92.71 -0.77 15.27 15 18 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 19 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.04 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 22 H 0.11 2.63 7.87 -2.39 -0.02 2.61 15 23 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 Total: -1.00 -77.69 246.16 4.11 -73.57 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.11 Total: 8.16 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 2.92 Total: -27.98 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.30 Total: -62.58 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -2.24 Total: -39.98 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -77.69 4.11 -73.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400738205.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.792 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds