Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86792 * 120.00118 * 2 1 4 4 H 1.48501 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47019 * 299.99986 * 3 2 1 6 6 H 1.48495 * 109.47116 * 59.99851 * 3 2 1 7 7 C 1.38634 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00362 * 180.02562 * 7 2 1 9 9 O 1.34933 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.42901 * 116.99565 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46824 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47113 * 64.99778 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.53003 * 117.49371 * 243.61887 * 14 13 12 16 16 C 1.53001 * 117.49608 * 174.99962 * 14 13 12 17 17 H 0.96997 * 119.99821 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47317 * 59.99944 * 10 9 7 19 19 H 1.09002 * 109.47468 * 299.99301 * 10 9 7 20 20 H 1.09007 * 109.46516 * 304.99711 * 11 10 9 21 21 H 1.09004 * 109.47113 * 185.00179 * 11 10 9 22 22 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 23 23 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 24 24 H 1.08995 * 115.55630 * 29.32572 * 14 13 12 25 25 H 1.08998 * 117.50656 * 0.02562 * 15 14 13 26 26 H 1.09001 * 117.49674 * 145.02590 * 15 14 13 27 27 H 1.09003 * 117.49710 * 214.97494 * 16 14 13 28 28 H 1.08998 * 117.50185 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3463 0.0006 5 1 1.8912 2.3963 -1.2125 6 1 1.8912 2.3963 1.2124 7 6 2.0090 -1.2006 0.0005 8 1 3.0891 -1.2007 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1127 -3.5676 0.0017 11 6 1.1806 -4.7810 0.0009 12 8 0.4402 -4.8121 -1.2210 13 6 -0.4657 -5.9125 -1.3238 14 6 -1.1994 -5.8454 -2.6647 15 6 -2.7158 -5.6443 -2.6308 16 6 -2.1330 -7.0050 -3.0178 17 1 -0.4850 0.8400 -0.0004 18 1 2.7408 -3.5921 0.8921 19 1 2.7421 -3.5930 -0.8879 20 1 0.4909 -4.7098 0.8420 21 1 1.7710 -5.6928 0.0913 22 1 -1.1895 -5.8645 -0.5102 23 1 0.0903 -6.8479 -1.2606 24 1 -0.6475 -5.3775 -3.4798 25 1 -3.1907 -5.5594 -1.6533 26 1 -3.1617 -5.0439 -3.4237 27 1 -2.1955 -7.2997 -4.0654 28 1 -2.2241 -7.8159 -2.2951 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400785359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = -59.576913 kcal Electronic energy + Delta-G solvation = -11128.410354 eV Core-core repulsion = 8953.151893 eV Total energy + Delta-G solvation = -2175.258461 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.10918 -36.60835 -35.53414 -31.71205 -29.22283 -26.28465 -24.27565 -22.30167 -21.59345 -20.37974 -17.51253 -16.53477 -15.63387 -15.43716 -14.63547 -14.25967 -13.78419 -13.36057 -13.13433 -12.16618 -11.97094 -11.47027 -11.31554 -10.92638 -10.81934 -10.58591 -10.30986 -10.04194 -10.00136 -9.49174 -9.13597 -8.96233 -7.88202 -5.86144 -3.49896 3.35704 3.38429 3.43275 3.77081 4.18558 4.37592 4.94364 5.00688 5.22193 5.45706 5.46023 5.53422 5.59131 5.65535 5.82207 5.87861 5.98908 6.02211 6.17338 6.34562 6.49167 6.66358 6.70136 7.54595 7.78417 8.50911 9.56465 10.26416 11.35024 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.057115 B = 0.007882 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.119766 B = 3551.692318 C = 3902.683815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.022 3.978 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.361 4.361 8 H 0.062 0.938 9 O -0.288 6.288 10 C 0.072 3.928 11 C 0.072 3.928 12 O -0.368 6.368 13 C 0.092 3.908 14 C -0.147 4.147 15 C -0.175 4.175 16 C -0.180 4.180 17 H 0.256 0.744 18 H 0.037 0.963 19 H 0.030 0.970 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -11.780 -2.806 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.440 4.440 8 H 0.080 0.920 9 O -0.203 6.203 10 C -0.005 4.005 11 C -0.005 4.005 12 O -0.286 6.286 13 C 0.015 3.985 14 C -0.165 4.165 15 C -0.212 4.212 16 C -0.217 4.217 17 H 0.066 0.934 18 H 0.055 0.945 19 H 0.049 0.951 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.131 0.869 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.612 -11.535 -2.947 12.014 hybrid contribution 0.674 0.601 0.212 0.928 sum -0.938 -10.933 -2.735 11.309 Atomic orbital electron populations 1.70058 1.05384 1.25596 1.51972 1.24956 0.95649 0.97691 0.99329 0.85902 0.78784 0.82455 0.77657 1.19971 1.20902 1.20952 1.20873 0.90178 0.82892 1.50052 0.92019 1.85713 1.31215 1.10170 1.93214 1.22119 0.92696 0.87233 0.98494 1.22544 0.94195 0.96825 0.86920 1.88060 1.55392 1.46856 1.38340 1.21918 0.91971 0.89503 0.95155 1.22127 0.92463 1.02743 0.99211 1.23037 0.96013 0.98903 1.03240 1.22956 1.04622 0.92104 1.02008 0.93382 0.94495 0.95148 0.93046 0.93484 0.93556 0.93767 0.86875 0.88647 0.88669 0.88727 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.95 13.68 55.48 0.76 -28.19 15 2 C 0.02 0.67 5.49 -17.51 -0.10 0.57 15 3 Si 0.92 22.77 29.55 -169.99 -5.02 17.75 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 7 C -0.36 -11.12 9.89 30.88 0.31 -10.82 15 8 H 0.06 1.78 7.77 -52.49 -0.41 1.37 15 9 O -0.29 -8.79 9.74 -21.37 -0.21 -9.00 15 10 C 0.07 1.69 6.40 37.16 0.24 1.93 15 11 C 0.07 1.41 6.32 37.16 0.23 1.64 15 12 O -0.37 -7.77 10.31 -40.08 -0.41 -8.18 15 13 C 0.09 1.47 6.22 37.16 0.23 1.70 15 14 C -0.15 -2.17 6.06 -90.62 -0.55 -2.72 15 15 C -0.17 -2.31 10.18 -26.73 -0.27 -2.58 15 16 C -0.18 -2.03 10.25 -26.73 -0.27 -2.30 15 17 H 0.26 7.74 8.31 -40.82 -0.34 7.40 15 18 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.05 0.72 7.88 -51.93 -0.41 0.31 15 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.11 1.76 8.14 -51.93 -0.42 1.34 15 25 H 0.10 1.24 8.03 -51.93 -0.42 0.82 15 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.09 0.93 8.14 -51.93 -0.42 0.50 15 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 LS Contribution 250.67 15.07 3.78 3.78 Total: -1.00 -35.17 250.67 -5.46 -40.63 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -4.17 Total: -4.21 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.18 Total: -12.57 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 0.76 Total: -28.19 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.62 Total: -17.18 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -35.17 -5.46 -40.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400785359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.947 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds