Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86792 * 120.00118 * 2 1 4 4 H 1.48501 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47019 * 299.99986 * 3 2 1 6 6 H 1.48495 * 109.47116 * 59.99851 * 3 2 1 7 7 C 1.38634 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00362 * 180.02562 * 7 2 1 9 9 O 1.34933 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.42901 * 116.99565 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46824 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47113 * 64.99778 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.53003 * 117.49371 * 243.61887 * 14 13 12 16 16 C 1.53001 * 117.49608 * 174.99962 * 14 13 12 17 17 H 0.96997 * 119.99821 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47317 * 59.99944 * 10 9 7 19 19 H 1.09002 * 109.47468 * 299.99301 * 10 9 7 20 20 H 1.09007 * 109.46516 * 304.99711 * 11 10 9 21 21 H 1.09004 * 109.47113 * 185.00179 * 11 10 9 22 22 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 23 23 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 24 24 H 1.08995 * 115.55630 * 29.32572 * 14 13 12 25 25 H 1.08998 * 117.50656 * 0.02562 * 15 14 13 26 26 H 1.09001 * 117.49674 * 145.02590 * 15 14 13 27 27 H 1.09003 * 117.49710 * 214.97494 * 16 14 13 28 28 H 1.08998 * 117.50185 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3463 0.0006 5 1 1.8912 2.3963 -1.2125 6 1 1.8912 2.3963 1.2124 7 6 2.0090 -1.2006 0.0005 8 1 3.0891 -1.2007 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1127 -3.5676 0.0017 11 6 1.1806 -4.7810 0.0009 12 8 0.4402 -4.8121 -1.2210 13 6 -0.4657 -5.9125 -1.3238 14 6 -1.1994 -5.8454 -2.6647 15 6 -2.7158 -5.6443 -2.6308 16 6 -2.1330 -7.0050 -3.0178 17 1 -0.4850 0.8400 -0.0004 18 1 2.7408 -3.5921 0.8921 19 1 2.7421 -3.5930 -0.8879 20 1 0.4909 -4.7098 0.8420 21 1 1.7710 -5.6928 0.0913 22 1 -1.1895 -5.8645 -0.5102 23 1 0.0903 -6.8479 -1.2606 24 1 -0.6475 -5.3775 -3.4798 25 1 -3.1907 -5.5594 -1.6533 26 1 -3.1617 -5.0439 -3.4237 27 1 -2.1955 -7.2997 -4.0654 28 1 -2.2241 -7.8159 -2.2951 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400785359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = -84.257310 kcal Electronic energy + Delta-G solvation = -11129.480576 eV Core-core repulsion = 8953.151893 eV Total energy + Delta-G solvation = -2176.328683 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.48627 -38.28454 -37.18778 -33.96303 -30.94499 -27.65399 -26.52790 -23.35384 -23.21295 -21.54714 -19.74022 -17.97396 -17.51886 -16.89624 -16.20912 -15.80712 -15.40696 -15.15567 -14.80253 -13.85375 -13.54068 -13.30204 -12.83115 -12.40879 -12.34010 -12.06575 -11.93694 -11.54818 -11.39821 -11.27592 -11.07187 -10.39419 -10.15884 -8.17026 -5.87673 1.39204 1.46064 1.56817 2.33746 2.59809 2.99878 3.16061 3.72353 3.88487 3.94956 4.11065 4.25056 4.33579 4.35362 4.58692 4.66482 4.71464 4.75866 4.83609 4.91863 4.99820 5.21953 5.22611 5.25342 6.20955 6.38523 7.24934 8.06756 9.08527 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.057115 B = 0.007882 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.119766 B = 3551.692318 C = 3902.683815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.046 4.046 3 Si 1.010 2.990 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.382 4.382 8 H 0.075 0.925 9 O -0.334 6.334 10 C 0.061 3.939 11 C 0.076 3.924 12 O -0.409 6.409 13 C 0.088 3.912 14 C -0.179 4.179 15 C -0.189 4.189 16 C -0.142 4.142 17 H 0.260 0.740 18 H 0.057 0.943 19 H 0.029 0.971 20 H 0.046 0.954 21 H 0.096 0.904 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 -12.459 -2.870 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.238 4.238 3 Si 0.832 3.168 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.092 0.908 9 O -0.251 6.251 10 C -0.016 4.016 11 C 0.000 4.000 12 O -0.329 6.329 13 C 0.012 3.988 14 C -0.198 4.198 15 C -0.226 4.226 16 C -0.179 4.179 17 H 0.069 0.931 18 H 0.075 0.925 19 H 0.048 0.952 20 H 0.064 0.936 21 H 0.114 0.886 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.817 -12.252 -3.009 12.643 hybrid contribution 0.423 0.693 0.217 0.840 sum -0.394 -11.560 -2.792 11.899 Atomic orbital electron populations 1.70241 1.07748 1.27123 1.53411 1.26326 0.96808 1.02247 0.98455 0.84636 0.78019 0.76152 0.78000 1.17913 1.20191 1.19859 1.21452 0.90975 0.83707 1.49986 0.90786 1.85641 1.33954 1.11919 1.93539 1.22499 0.93683 0.86216 0.99216 1.22559 0.94131 0.96899 0.86420 1.88000 1.56613 1.49474 1.38857 1.22159 0.91652 0.89163 0.95850 1.22155 0.93050 1.06203 0.98353 1.23137 0.94922 1.01095 1.03462 1.23071 1.00089 0.91115 1.03626 0.93103 0.92487 0.95236 0.93617 0.88617 0.93499 0.90887 0.88632 0.88837 0.88518 0.86811 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.72 13.68 21.61 0.30 -62.42 15 2 C -0.05 -2.81 5.49 84.82 0.47 -2.35 15 3 Si 1.01 46.70 29.55 68.60 2.03 48.73 15 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 7 C -0.38 -23.86 9.89 67.91 0.67 -23.19 15 8 H 0.07 4.25 7.77 -2.91 -0.02 4.23 15 9 O -0.33 -20.90 9.74 -77.38 -0.75 -21.66 15 10 C 0.06 2.85 6.40 71.99 0.46 3.31 15 11 C 0.08 2.92 6.32 71.99 0.45 3.38 15 12 O -0.41 -17.38 10.31 -144.34 -1.49 -18.87 15 13 C 0.09 2.74 6.22 71.98 0.45 3.19 15 14 C -0.18 -5.19 6.06 -10.79 -0.07 -5.25 15 15 C -0.19 -4.87 10.18 30.60 0.31 -4.56 15 16 C -0.14 -2.85 10.25 30.60 0.31 -2.54 15 17 H 0.26 16.01 8.31 -92.71 -0.77 15.24 15 18 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 19 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.05 1.78 8.14 -2.38 -0.02 1.76 15 21 H 0.10 2.72 8.14 -2.38 -0.02 2.70 15 22 H 0.05 1.43 7.88 -2.39 -0.02 1.41 15 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.10 3.06 8.14 -2.39 -0.02 3.04 15 25 H 0.09 2.41 8.03 -2.39 -0.02 2.39 15 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.11 1.87 8.14 -2.39 -0.02 1.85 15 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 15 Total: -1.00 -77.40 250.67 4.26 -73.14 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.11 Total: 9.09 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.06 Total: -28.01 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.30 Total: -62.42 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -2.24 Total: -40.52 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -77.40 4.26 -73.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400785359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.116 kcal (2) G-P(sol) polarization free energy of solvation -77.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds