Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.48751 * 2 1 4 4 C 1.53091 * 109.48095 * 239.96980 * 2 1 3 5 5 C 1.53183 * 109.16265 * 182.40549 * 4 2 1 6 6 C 1.53180 * 109.03462 * 56.98388 * 5 4 2 7 7 O 1.42898 * 109.52217 * 62.98469 * 6 5 4 8 8 C 1.50701 * 109.52186 * 183.11598 * 6 5 4 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 6 5 10 10 C 1.37871 * 119.99694 * 180.27885 * 8 6 5 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 6 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 6 13 13 H 1.48504 * 109.47209 * 89.99886 * 12 10 8 14 14 H 1.48501 * 109.47358 * 209.99377 * 12 10 8 15 15 H 1.48496 * 109.47341 * 329.99989 * 12 10 8 16 16 C 1.53096 * 109.16152 * 303.01872 * 6 5 4 17 17 O 1.42901 * 109.41524 * 57.60785 * 16 6 5 18 18 H 1.09001 * 109.47395 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.47411 * 300.02756 * 1 2 3 20 20 H 1.09003 * 109.47486 * 60.03110 * 1 2 3 21 21 H 1.09007 * 109.51793 * 62.50796 * 4 2 1 22 22 H 1.08993 * 109.52520 * 302.31469 * 4 2 1 23 23 H 1.08997 * 109.54371 * 297.11896 * 5 4 2 24 24 H 1.08999 * 109.61631 * 176.89080 * 5 4 2 25 25 H 0.96701 * 113.99670 * 180.12150 * 7 6 5 26 26 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 27 27 H 1.09005 * 109.47795 * 177.59170 * 16 6 5 28 28 H 1.09003 * 109.47911 * 297.62586 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7708 -1.2121 6 6 4.0176 -1.4600 0.0809 7 8 3.5517 -2.8109 0.0875 8 6 5.5222 -1.4457 0.1656 9 1 6.1031 -0.9912 -0.6234 10 6 6.1572 -2.0183 1.2471 11 7 5.4499 -2.5720 2.2077 12 14 8.0224 -2.0074 1.3482 13 1 8.4730 -0.7785 2.0497 14 1 8.4845 -3.2029 2.0982 15 1 8.5927 -2.0320 -0.0226 16 6 3.4306 -0.7093 1.2791 17 8 2.0065 -0.6742 1.1664 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5143 0.8898 20 1 -0.3634 0.5134 -0.8903 21 1 1.7148 -0.1842 -2.1398 22 1 1.6443 -1.7374 -1.2709 23 1 3.9689 0.2436 -1.2407 24 1 3.9405 -1.3318 -2.0706 25 1 3.7973 -3.3078 0.8799 26 1 5.8967 -2.9751 2.9684 27 1 3.7099 -1.2203 2.2005 28 1 3.8192 0.3090 1.2958 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401550186.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = -113.547739 kcal Electronic energy + Delta-G solvation = -12258.547424 eV Core-core repulsion = 10080.948613 eV Total energy + Delta-G solvation = -2177.598811 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.61399 -35.17227 -32.44607 -32.02712 -30.48014 -27.02641 -24.63903 -23.03019 -21.01480 -18.93846 -16.96425 -15.75788 -15.05709 -14.61566 -14.09732 -13.67592 -13.14576 -12.52228 -12.45629 -11.90397 -11.79749 -11.38169 -11.12752 -10.98841 -10.63898 -10.42678 -10.30155 -10.12457 -9.56348 -9.28812 -8.89404 -8.50902 -7.69415 -6.21302 -4.31963 3.21324 3.28863 3.32755 4.28466 4.75881 5.07472 5.43115 5.63813 5.79227 5.94197 6.05741 6.16489 6.21943 6.35331 6.46413 6.59496 6.69112 6.73083 6.95124 7.10099 7.45002 7.55528 7.86243 8.05672 8.38381 8.72289 9.37765 9.60965 10.82875 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.074488 B = 0.012791 C = 0.012197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.809042 B = 2188.560778 C = 2295.004062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.042 0.958 4 C -0.143 4.143 5 C -0.101 4.101 6 C 0.224 3.776 7 O -0.583 6.583 8 C -0.539 4.539 9 H 0.061 0.939 10 C 0.068 3.932 11 N -0.900 5.900 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.040 3.960 17 O -0.389 6.389 18 H 0.060 0.940 19 H 0.055 0.945 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.379 0.621 26 H 0.269 0.731 27 H 0.121 0.879 28 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 3.858 -2.628 6.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.060 0.940 4 C -0.181 4.181 5 C -0.139 4.139 6 C 0.184 3.816 7 O -0.392 6.392 8 C -0.577 4.577 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.730 3.270 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.036 4.036 17 O -0.309 6.309 18 H 0.079 0.921 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.229 0.771 26 H 0.079 0.921 27 H 0.139 0.861 28 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.813 3.860 -2.905 6.819 hybrid contribution 1.581 0.004 0.469 1.649 sum -3.232 3.864 -2.436 5.596 Atomic orbital electron populations 1.21737 0.94582 1.02343 1.01155 1.21894 0.93811 0.94470 0.87037 0.93998 1.22154 0.97704 1.01415 0.96835 1.21523 0.93563 0.99472 0.99347 1.19155 0.91627 0.80944 0.89890 1.86104 1.80269 1.25420 1.47409 1.21757 0.91920 1.37800 1.06219 0.92044 1.25063 0.99188 0.94112 0.94993 1.69569 1.35732 1.38485 1.10300 0.86417 0.84640 0.77654 0.78250 1.20492 1.20965 1.19792 1.23609 0.77371 0.98837 1.03785 1.87847 1.23866 1.77706 1.41451 0.92108 0.92608 0.92091 0.93032 0.90962 0.92462 0.92391 0.77102 0.92059 0.86115 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.56 37.15 0.36 -1.83 15 2 C 0.09 1.67 3.26 -26.69 -0.09 1.58 15 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 4 C -0.14 -2.81 5.26 -26.59 -0.14 -2.95 15 5 C -0.10 -2.27 4.98 -26.54 -0.13 -2.40 15 6 C 0.22 5.77 0.69 -91.63 -0.06 5.71 15 7 O -0.58 -15.88 12.38 -42.60 -0.53 -16.41 15 8 C -0.54 -14.72 8.25 -34.44 -0.28 -15.00 15 9 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 10 C 0.07 1.81 5.22 -17.82 -0.09 1.72 15 11 N -0.90 -24.28 9.73 55.43 0.54 -23.74 15 12 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 15 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 16 C 0.04 1.00 5.53 37.21 0.21 1.21 15 17 O -0.39 -9.12 10.34 -42.60 -0.44 -9.56 15 18 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.07 1.52 7.83 -51.93 -0.41 1.11 15 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.38 10.50 7.13 45.56 0.32 10.82 15 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 27 H 0.12 3.26 6.18 -51.93 -0.32 2.94 15 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 LS Contribution 228.40 15.07 3.44 3.44 Total: -1.00 -28.13 228.40 -5.57 -33.70 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -3.33 Total: 8.81 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.24 Total: -11.97 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.54 Total: -23.74 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.97 Total: -25.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.13 -5.57 -33.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401550186.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.843 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds