Wall clock time and date at job start Mon Mar 30 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47705 * 2 1 4 4 C 1.53099 * 109.47817 * 120.01800 * 2 1 3 5 5 C 1.53175 * 109.16062 * 177.59515 * 4 2 1 6 6 C 1.53176 * 109.03533 * 303.01983 * 5 4 2 7 7 O 1.42907 * 109.52061 * 176.95349 * 6 5 4 8 8 C 1.50694 * 109.52329 * 297.07551 * 6 5 4 9 9 H 1.08002 * 120.00179 * 359.97438 * 8 6 5 10 10 C 1.37879 * 120.00472 * 180.02562 * 8 6 5 11 11 N 1.31514 * 119.99350 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00608 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47339 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47239 * 300.00306 * 12 10 8 15 15 H 1.48504 * 109.46636 * 59.99865 * 12 10 8 16 16 C 1.53088 * 109.16378 * 56.98284 * 6 5 4 17 17 O 1.42896 * 109.48409 * 239.96405 * 2 1 3 18 18 H 1.09002 * 109.47433 * 299.98098 * 1 2 3 19 19 H 1.08997 * 109.47227 * 59.98416 * 1 2 3 20 20 H 1.09007 * 109.47325 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.52109 * 57.68880 * 4 2 1 22 22 H 1.09004 * 109.57532 * 297.52868 * 4 2 1 23 23 H 1.09000 * 109.54197 * 183.15423 * 5 4 2 24 24 H 1.09007 * 109.54665 * 62.88726 * 5 4 2 25 25 H 0.96701 * 114.00042 * 180.13093 * 7 6 5 26 26 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 27 27 H 1.08997 * 109.48411 * 62.37507 * 16 6 5 28 28 H 1.09001 * 109.47864 * 182.40672 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0405 -0.7221 1.2498 5 6 3.5710 -0.7706 1.2124 6 6 4.0176 -1.4600 -0.0805 7 8 5.4444 -1.4478 -0.1599 8 6 3.5250 -2.8841 -0.0879 9 1 2.9511 -3.2614 0.7456 10 6 3.8078 -3.7060 -1.1583 11 7 4.5070 -3.2467 -2.1730 12 14 3.1978 -5.4715 -1.1672 13 1 3.6313 -6.1387 -2.4210 14 1 3.7617 -6.1959 0.0000 15 1 1.7150 -5.4832 -1.0878 16 6 3.4307 -0.7094 -1.2788 17 8 2.0066 -0.6743 -1.1662 18 1 -0.3634 0.5135 0.8902 19 1 -0.3633 0.5141 -0.8898 20 1 -0.3634 -1.0277 -0.0005 21 1 1.6442 -1.7373 1.2713 22 1 1.7147 -0.1849 2.1406 23 1 3.9390 -1.3323 2.0710 24 1 3.9689 0.2439 1.2409 25 1 5.7976 -1.8672 -0.9565 26 1 4.7064 -3.8249 -2.9260 27 1 3.8192 0.3088 -1.2957 28 1 3.7100 -1.2206 -2.2001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401550189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:27 Heat of formation + Delta-G solvation = -109.987201 kcal Electronic energy + Delta-G solvation = -12373.941064 eV Core-core repulsion = 10196.496649 eV Total energy + Delta-G solvation = -2177.444415 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.60800 -35.28685 -32.39938 -32.00213 -30.50087 -26.50620 -24.85870 -23.10487 -21.02924 -19.06048 -16.64453 -15.71404 -15.07740 -14.94453 -13.92524 -13.74128 -13.34110 -12.47081 -12.18754 -11.67439 -11.64455 -11.36857 -11.11370 -10.89735 -10.75598 -10.43347 -10.28546 -10.02712 -9.84071 -9.11450 -8.77779 -8.46659 -7.74261 -6.12487 -4.19187 3.30421 3.34087 3.37525 4.38250 4.78635 5.17041 5.47546 5.66546 5.75473 5.89652 6.14719 6.15793 6.32643 6.41935 6.46973 6.60302 6.67071 6.68273 7.01764 7.03127 7.31640 7.58594 7.94380 8.16636 8.43237 8.79114 9.44163 9.54615 10.93092 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040551 B = 0.017466 C = 0.015113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.330255 B = 1602.721998 C = 1852.262721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.084 3.916 3 H 0.039 0.961 4 C -0.136 4.136 5 C -0.102 4.102 6 C 0.217 3.783 7 O -0.592 6.592 8 C -0.513 4.513 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.907 5.907 12 Si 0.902 3.098 13 H -0.286 1.286 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.045 3.955 17 O -0.367 6.367 18 H 0.060 0.940 19 H 0.054 0.946 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.381 0.619 26 H 0.268 0.732 27 H 0.008 0.992 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 4.037 2.678 6.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.057 0.943 4 C -0.173 4.173 5 C -0.139 4.139 6 C 0.178 3.822 7 O -0.401 6.401 8 C -0.551 4.551 9 H 0.077 0.923 10 C -0.132 4.132 11 N -0.549 5.549 12 Si 0.730 3.270 13 H -0.212 1.212 14 H -0.203 1.203 15 H -0.201 1.201 16 C -0.032 4.032 17 O -0.286 6.286 18 H 0.078 0.922 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.232 0.768 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.479 4.200 2.945 6.810 hybrid contribution -0.053 -1.141 -0.406 1.213 sum -4.532 3.059 2.539 6.028 Atomic orbital electron populations 1.21719 0.94501 1.02484 1.01059 1.21905 0.93939 0.94245 0.87334 0.94264 1.22106 0.96453 1.01943 0.96834 1.21438 0.94284 0.98834 0.99369 1.19253 0.79208 0.93731 0.90025 1.86117 1.22410 1.82804 1.48758 1.21544 1.33483 0.95941 1.04149 0.92268 1.24963 0.94409 0.99041 0.94831 1.69482 1.40253 1.36599 1.08535 0.86491 0.79286 0.83999 0.77241 1.21195 1.20305 1.20144 1.23384 0.79444 0.96306 1.04028 1.87903 1.22418 1.77509 1.40798 0.92155 0.92647 0.91938 0.90384 0.92934 0.92372 0.94018 0.76811 0.92224 0.97339 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.56 37.16 0.36 -1.89 15 2 C 0.08 1.65 3.26 -26.68 -0.09 1.57 15 3 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 4 C -0.14 -2.68 5.15 -26.59 -0.14 -2.82 15 5 C -0.10 -2.28 5.13 -26.55 -0.14 -2.42 15 6 C 0.22 5.62 0.85 -91.64 -0.08 5.54 15 7 O -0.59 -15.87 12.97 -35.23 -0.46 -16.33 15 8 C -0.51 -14.14 7.26 -34.44 -0.25 -14.39 15 9 H 0.06 1.63 6.91 -52.49 -0.36 1.26 15 10 C 0.07 1.85 5.22 -17.82 -0.09 1.75 15 11 N -0.91 -24.74 9.69 55.43 0.54 -24.20 15 12 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 15 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 16 C 0.05 1.13 5.70 37.20 0.21 1.35 15 17 O -0.37 -8.83 10.09 -35.23 -0.36 -9.18 15 18 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.08 1.65 6.88 -51.93 -0.36 1.30 15 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.04 0.88 8.14 -51.92 -0.42 0.46 15 25 H 0.38 10.24 7.14 45.56 0.33 10.57 15 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 28 H 0.12 3.24 6.05 -51.93 -0.31 2.93 15 LS Contribution 226.17 15.07 3.41 3.41 Total: -1.00 -28.53 226.17 -5.33 -33.86 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.23 Total: 7.36 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.21 Total: -11.31 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.54 Total: -24.20 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.81 Total: -25.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.53 -5.33 -33.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401550189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.129 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds