Wall clock time and date at job start Mon Mar 30 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47705 * 2 1 4 4 C 1.53099 * 109.47817 * 120.01800 * 2 1 3 5 5 C 1.53175 * 109.16062 * 177.59515 * 4 2 1 6 6 C 1.53176 * 109.03533 * 303.01983 * 5 4 2 7 7 O 1.42907 * 109.52061 * 176.95349 * 6 5 4 8 8 C 1.50694 * 109.52329 * 297.07551 * 6 5 4 9 9 H 1.08002 * 120.00179 * 359.97438 * 8 6 5 10 10 C 1.37879 * 120.00472 * 180.02562 * 8 6 5 11 11 N 1.31514 * 119.99350 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00608 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47339 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47239 * 300.00306 * 12 10 8 15 15 H 1.48504 * 109.46636 * 59.99865 * 12 10 8 16 16 C 1.53088 * 109.16378 * 56.98284 * 6 5 4 17 17 O 1.42896 * 109.48409 * 239.96405 * 2 1 3 18 18 H 1.09002 * 109.47433 * 299.98098 * 1 2 3 19 19 H 1.08997 * 109.47227 * 59.98416 * 1 2 3 20 20 H 1.09007 * 109.47325 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.52109 * 57.68880 * 4 2 1 22 22 H 1.09004 * 109.57532 * 297.52868 * 4 2 1 23 23 H 1.09000 * 109.54197 * 183.15423 * 5 4 2 24 24 H 1.09007 * 109.54665 * 62.88726 * 5 4 2 25 25 H 0.96701 * 114.00042 * 180.13093 * 7 6 5 26 26 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 27 27 H 1.08997 * 109.48411 * 62.37507 * 16 6 5 28 28 H 1.09001 * 109.47864 * 182.40672 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0405 -0.7221 1.2498 5 6 3.5710 -0.7706 1.2124 6 6 4.0176 -1.4600 -0.0805 7 8 5.4444 -1.4478 -0.1599 8 6 3.5250 -2.8841 -0.0879 9 1 2.9511 -3.2614 0.7456 10 6 3.8078 -3.7060 -1.1583 11 7 4.5070 -3.2467 -2.1730 12 14 3.1978 -5.4715 -1.1672 13 1 3.6313 -6.1387 -2.4210 14 1 3.7617 -6.1959 0.0000 15 1 1.7150 -5.4832 -1.0878 16 6 3.4307 -0.7094 -1.2788 17 8 2.0066 -0.6743 -1.1662 18 1 -0.3634 0.5135 0.8902 19 1 -0.3633 0.5141 -0.8898 20 1 -0.3634 -1.0277 -0.0005 21 1 1.6442 -1.7373 1.2713 22 1 1.7147 -0.1849 2.1406 23 1 3.9390 -1.3323 2.0710 24 1 3.9689 0.2439 1.2409 25 1 5.7976 -1.8672 -0.9565 26 1 4.7064 -3.8249 -2.9260 27 1 3.8192 0.3088 -1.2957 28 1 3.7100 -1.2206 -2.2001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401550189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:27 Heat of formation + Delta-G solvation = -130.432542 kcal Electronic energy + Delta-G solvation = -12374.827641 eV Core-core repulsion = 10196.496649 eV Total energy + Delta-G solvation = -2178.330991 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.40488 -37.22633 -34.21072 -33.97785 -32.20435 -28.28427 -26.85226 -24.83376 -22.66555 -20.91821 -18.66843 -17.54709 -17.05232 -16.76585 -15.79216 -15.41667 -15.15199 -14.21991 -13.88511 -13.54287 -13.21631 -12.99236 -12.87569 -12.72485 -12.44404 -12.35635 -12.17216 -11.79651 -11.58825 -10.91962 -10.71866 -10.50793 -9.67649 -8.17525 -6.31493 1.40990 1.42190 1.49396 2.40458 3.00847 3.21877 3.95182 3.99448 4.17097 4.36840 4.50240 4.56584 4.69953 4.77137 4.94559 4.97252 5.05483 5.13627 5.27174 5.38622 5.49049 5.56600 5.91499 6.15562 6.64217 6.69286 7.34482 7.43669 8.85956 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040551 B = 0.017466 C = 0.015113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.330255 B = 1602.721998 C = 1852.262721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.071 3.929 3 H 0.054 0.946 4 C -0.129 4.129 5 C -0.102 4.102 6 C 0.202 3.798 7 O -0.600 6.600 8 C -0.534 4.534 9 H 0.052 0.948 10 C 0.025 3.975 11 N -0.920 5.920 12 Si 0.959 3.041 13 H -0.280 1.280 14 H -0.274 1.274 15 H -0.275 1.275 16 C 0.055 3.945 17 O -0.390 6.390 18 H 0.096 0.904 19 H 0.062 0.938 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.377 0.623 26 H 0.269 0.731 27 H 0.017 0.983 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 4.404 3.441 7.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.014 3.986 3 H 0.072 0.928 4 C -0.166 4.166 5 C -0.140 4.140 6 C 0.162 3.838 7 O -0.409 6.409 8 C -0.572 4.572 9 H 0.070 0.930 10 C -0.174 4.174 11 N -0.562 5.562 12 Si 0.784 3.216 13 H -0.205 1.205 14 H -0.200 1.200 15 H -0.201 1.201 16 C -0.023 4.023 17 O -0.309 6.309 18 H 0.115 0.885 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.112 0.888 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.226 0.774 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.647 4.578 3.716 8.164 hybrid contribution 0.312 -1.210 -0.628 1.398 sum -5.335 3.368 3.088 7.024 Atomic orbital electron populations 1.21724 0.91533 1.02531 1.03286 1.22308 0.96289 0.94400 0.85618 0.92797 1.22079 0.94202 1.01590 0.98775 1.21469 0.96419 0.98862 0.97259 1.19534 0.78444 0.93700 0.92082 1.86109 1.23499 1.82730 1.48559 1.21748 1.34023 0.97212 1.04227 0.92976 1.25664 0.94637 1.02481 0.94614 1.69584 1.40388 1.37529 1.08669 0.85606 0.78629 0.79903 0.77418 1.20516 1.19951 1.20093 1.23082 0.80458 0.96188 1.02543 1.87858 1.21423 1.78437 1.43195 0.88531 0.91865 0.92967 0.92255 0.88828 0.92918 0.92884 0.77365 0.92125 0.96499 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.56 71.98 0.69 -3.15 15 2 C 0.07 2.63 3.26 30.63 0.10 2.73 15 3 H 0.05 1.84 8.14 -2.38 -0.02 1.82 15 4 C -0.13 -4.79 5.15 30.69 0.16 -4.63 15 5 C -0.10 -4.47 5.13 30.71 0.16 -4.31 15 6 C 0.20 10.41 0.85 -11.45 -0.01 10.40 15 7 O -0.60 -32.48 12.97 -148.98 -1.93 -34.42 15 8 C -0.53 -29.53 7.26 25.60 0.19 -29.35 15 9 H 0.05 2.88 6.91 -2.91 -0.02 2.86 15 10 C 0.02 1.35 5.22 84.66 0.44 1.79 15 11 N -0.92 -50.61 9.69 21.45 0.21 -50.40 15 12 Si 0.96 43.80 29.54 68.60 2.03 45.83 15 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 16 C 0.05 2.74 5.70 72.01 0.41 3.15 15 17 O -0.39 -18.43 10.09 -148.98 -1.50 -19.93 15 18 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 19 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.05 1.60 8.14 -2.38 -0.02 1.58 15 21 H 0.06 2.43 6.88 -2.39 -0.02 2.41 15 22 H 0.09 2.70 8.14 -2.38 -0.02 2.68 15 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.05 2.15 8.14 -2.38 -0.02 2.13 15 25 H 0.38 20.65 7.14 -74.06 -0.53 20.12 15 26 H 0.27 14.12 8.31 -92.70 -0.77 13.35 15 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 15 28 H 0.09 5.13 6.05 -2.39 -0.01 5.11 15 Total: -1.00 -60.02 226.17 1.55 -58.48 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.61 Total: 23.82 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 2.13 Total: -23.38 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.21 Total: -50.40 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -3.44 Total: -54.35 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.02 1.55 -58.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401550189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.953 kcal (2) G-P(sol) polarization free energy of solvation -60.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds