Wall clock time and date at job start Mon Mar 30 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.48367 * 2 1 4 4 C 1.53099 * 109.47704 * 239.97111 * 2 1 3 5 5 C 1.53183 * 109.16174 * 182.40824 * 4 2 1 6 6 C 1.53177 * 109.03508 * 56.98286 * 5 4 2 7 7 O 1.42896 * 109.57251 * 183.08320 * 6 5 4 8 8 C 1.50698 * 109.52450 * 62.92032 * 6 5 4 9 9 H 1.07994 * 120.00656 * 265.48714 * 8 6 5 10 10 C 1.37883 * 119.99535 * 85.76077 * 8 6 5 11 11 N 1.31516 * 119.99928 * 174.73685 * 10 8 6 12 12 Si 1.86799 * 120.00026 * 354.74632 * 10 8 6 13 13 H 1.48498 * 109.47494 * 85.10558 * 12 10 8 14 14 H 1.48502 * 109.46811 * 205.10523 * 12 10 8 15 15 H 1.48496 * 109.47151 * 325.10469 * 12 10 8 16 16 C 1.53098 * 109.16334 * 303.01716 * 6 5 4 17 17 O 1.42898 * 109.48198 * 120.02985 * 2 1 3 18 18 H 1.08999 * 109.46656 * 299.97535 * 1 2 3 19 19 H 1.09005 * 109.47184 * 59.96910 * 1 2 3 20 20 H 1.08994 * 109.47306 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.52599 * 302.31479 * 4 2 1 22 22 H 1.09001 * 109.52326 * 62.44514 * 4 2 1 23 23 H 1.08998 * 109.54334 * 297.11424 * 5 4 2 24 24 H 1.09000 * 109.54241 * 176.84691 * 5 4 2 25 25 H 0.96709 * 113.99918 * 174.56736 * 7 6 5 26 26 H 0.96996 * 120.00227 * 180.02562 * 11 10 8 27 27 H 1.09000 * 109.48279 * 177.59034 * 16 6 5 28 28 H 1.08999 * 109.48309 * 297.62812 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2496 5 6 3.5711 -0.7710 -1.2123 6 6 4.0176 -1.4602 0.0807 7 8 5.4442 -1.4480 0.1617 8 6 3.5248 -2.8843 0.0884 9 1 2.5927 -3.1307 0.5749 10 6 4.2670 -3.8738 -0.5210 11 7 3.8911 -5.1306 -0.4259 12 14 5.8063 -3.4294 -1.4814 13 1 6.9605 -3.3371 -0.5516 14 1 6.0737 -4.4764 -2.5000 15 1 5.6084 -2.1214 -2.1560 16 6 3.4307 -0.7094 1.2790 17 8 2.0066 -0.6742 1.1663 18 1 -0.3632 0.5135 0.8902 19 1 -0.3634 0.5143 -0.8897 20 1 -0.3633 -1.0276 -0.0005 21 1 1.6442 -1.7374 -1.2711 22 1 1.7139 -0.1849 -2.1400 23 1 3.9689 0.2434 -1.2409 24 1 3.9391 -1.3328 -2.0708 25 1 5.7939 -1.7940 0.9943 26 1 4.4134 -5.8267 -0.8543 27 1 3.7100 -1.2204 2.2004 28 1 3.8193 0.3088 1.2957 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401550190.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:28 Heat of formation + Delta-G solvation = -105.379061 kcal Electronic energy + Delta-G solvation = -12368.499029 eV Core-core repulsion = 10191.254438 eV Total energy + Delta-G solvation = -2177.244591 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.98788 -35.93493 -32.63995 -32.13762 -30.81794 -26.92156 -25.03417 -23.22951 -21.25667 -19.16212 -17.12040 -15.99644 -15.24485 -15.00319 -14.45273 -14.07941 -13.10172 -12.83924 -12.46116 -12.15358 -11.83830 -11.71129 -11.56577 -11.23109 -10.72706 -10.33204 -10.28846 -9.87686 -9.80144 -9.17530 -8.88991 -8.42938 -8.07299 -6.04975 -4.14070 3.51798 3.57606 3.74886 4.42012 4.60205 5.19367 5.33949 5.37941 5.55828 5.70628 5.94330 6.01004 6.02000 6.11996 6.21897 6.33014 6.36452 6.50074 6.60061 6.92731 7.08668 7.27390 7.63160 7.95754 8.29798 8.73699 9.02770 9.57744 11.04552 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052209 B = 0.016381 C = 0.015447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.173559 B = 1708.865361 C = 1812.182695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.043 0.957 4 C -0.136 4.136 5 C -0.104 4.104 6 C 0.187 3.813 7 O -0.567 6.567 8 C -0.541 4.541 9 H 0.083 0.917 10 C 0.069 3.931 11 N -0.895 5.895 12 Si 0.945 3.055 13 H -0.294 1.294 14 H -0.328 1.328 15 H -0.269 1.269 16 C 0.056 3.944 17 O -0.370 6.370 18 H 0.055 0.945 19 H 0.063 0.937 20 H 0.065 0.935 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.036 0.964 24 H 0.068 0.932 25 H 0.369 0.631 26 H 0.263 0.737 27 H 0.086 0.914 28 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 9.442 0.148 9.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.061 0.939 4 C -0.173 4.173 5 C -0.142 4.142 6 C 0.147 3.853 7 O -0.375 6.375 8 C -0.578 4.578 9 H 0.101 0.899 10 C -0.134 4.134 11 N -0.532 5.532 12 Si 0.781 3.219 13 H -0.222 1.222 14 H -0.260 1.260 15 H -0.196 1.196 16 C -0.021 4.021 17 O -0.289 6.289 18 H 0.074 0.926 19 H 0.082 0.918 20 H 0.084 0.916 21 H 0.106 0.894 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.087 0.913 25 H 0.216 0.784 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.255 9.438 -0.342 9.710 hybrid contribution 1.087 -0.074 -0.149 1.100 sum -1.168 9.364 -0.490 9.450 Atomic orbital electron populations 1.21731 0.94011 1.02856 1.01293 1.21991 0.94269 0.94160 0.86654 0.93869 1.22086 0.96231 1.02572 0.96451 1.21709 0.94685 0.98255 0.99542 1.19899 0.77516 0.96174 0.91691 1.86130 1.23658 1.86086 1.41604 1.21282 1.09543 0.89392 1.37632 0.89882 1.25121 0.98450 0.94582 0.95249 1.69982 1.39927 0.99869 1.43390 0.85796 0.81948 0.75767 0.78379 1.22184 1.26020 1.19576 1.23155 0.81109 0.97615 1.00267 1.87863 1.21005 1.78009 1.42007 0.92595 0.91776 0.91633 0.89440 0.92557 0.94485 0.91326 0.78382 0.92757 0.89626 0.95302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.56 37.16 0.36 -1.75 15 2 C 0.09 1.57 3.26 -26.68 -0.09 1.48 15 3 H 0.04 0.72 8.14 -51.93 -0.42 0.29 15 4 C -0.14 -2.63 5.16 -26.59 -0.14 -2.77 15 5 C -0.10 -2.27 4.84 -26.55 -0.13 -2.40 15 6 C 0.19 4.34 0.72 -91.63 -0.07 4.28 15 7 O -0.57 -12.81 8.48 -35.23 -0.30 -13.11 15 8 C -0.54 -14.96 7.48 -34.44 -0.26 -15.22 15 9 H 0.08 2.56 7.82 -52.49 -0.41 2.15 15 10 C 0.07 2.00 5.46 -17.82 -0.10 1.90 15 11 N -0.90 -27.48 13.96 55.43 0.77 -26.71 15 12 Si 0.94 24.27 24.28 -169.99 -4.13 20.15 15 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 14 H -0.33 -8.64 7.11 56.52 0.40 -8.24 15 15 H -0.27 -6.83 5.38 56.52 0.30 -6.52 15 16 C 0.06 1.15 5.83 37.21 0.22 1.37 15 17 O -0.37 -7.81 9.93 -35.23 -0.35 -8.16 15 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.09 1.92 7.39 -51.93 -0.38 1.54 15 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.07 1.61 5.71 -51.93 -0.30 1.31 15 25 H 0.37 7.26 8.96 45.56 0.41 7.67 15 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 27 H 0.09 1.71 8.14 -51.93 -0.42 1.29 15 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 LS Contribution 221.88 15.07 3.34 3.34 Total: -1.00 -31.39 221.88 -4.16 -35.54 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -3.30 Total: 2.06 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.20 Total: -13.11 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.65 Total: -21.27 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.13 Total: 20.15 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.39 -4.16 -35.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401550190.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.835 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds