Wall clock time and date at job start Mon Mar 30 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.48367 * 2 1 4 4 C 1.53099 * 109.47704 * 239.97111 * 2 1 3 5 5 C 1.53183 * 109.16174 * 182.40824 * 4 2 1 6 6 C 1.53177 * 109.03508 * 56.98286 * 5 4 2 7 7 O 1.42896 * 109.57251 * 183.08320 * 6 5 4 8 8 C 1.50698 * 109.52450 * 62.92032 * 6 5 4 9 9 H 1.07994 * 120.00656 * 265.48714 * 8 6 5 10 10 C 1.37883 * 119.99535 * 85.76077 * 8 6 5 11 11 N 1.31516 * 119.99928 * 174.73685 * 10 8 6 12 12 Si 1.86799 * 120.00026 * 354.74632 * 10 8 6 13 13 H 1.48498 * 109.47494 * 85.10558 * 12 10 8 14 14 H 1.48502 * 109.46811 * 205.10523 * 12 10 8 15 15 H 1.48496 * 109.47151 * 325.10469 * 12 10 8 16 16 C 1.53098 * 109.16334 * 303.01716 * 6 5 4 17 17 O 1.42898 * 109.48198 * 120.02985 * 2 1 3 18 18 H 1.08999 * 109.46656 * 299.97535 * 1 2 3 19 19 H 1.09005 * 109.47184 * 59.96910 * 1 2 3 20 20 H 1.08994 * 109.47306 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.52599 * 302.31479 * 4 2 1 22 22 H 1.09001 * 109.52326 * 62.44514 * 4 2 1 23 23 H 1.08998 * 109.54334 * 297.11424 * 5 4 2 24 24 H 1.09000 * 109.54241 * 176.84691 * 5 4 2 25 25 H 0.96709 * 113.99918 * 174.56736 * 7 6 5 26 26 H 0.96996 * 120.00227 * 180.02562 * 11 10 8 27 27 H 1.09000 * 109.48279 * 177.59034 * 16 6 5 28 28 H 1.08999 * 109.48309 * 297.62812 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2496 5 6 3.5711 -0.7710 -1.2123 6 6 4.0176 -1.4602 0.0807 7 8 5.4442 -1.4480 0.1617 8 6 3.5248 -2.8843 0.0884 9 1 2.5927 -3.1307 0.5749 10 6 4.2670 -3.8738 -0.5210 11 7 3.8911 -5.1306 -0.4259 12 14 5.8063 -3.4294 -1.4814 13 1 6.9605 -3.3371 -0.5516 14 1 6.0737 -4.4764 -2.5000 15 1 5.6084 -2.1214 -2.1560 16 6 3.4307 -0.7094 1.2790 17 8 2.0066 -0.6742 1.1663 18 1 -0.3632 0.5135 0.8902 19 1 -0.3634 0.5143 -0.8897 20 1 -0.3633 -1.0276 -0.0005 21 1 1.6442 -1.7374 -1.2711 22 1 1.7139 -0.1849 -2.1400 23 1 3.9689 0.2434 -1.2409 24 1 3.9391 -1.3328 -2.0708 25 1 5.7939 -1.7940 0.9943 26 1 4.4134 -5.8267 -0.8543 27 1 3.7100 -1.2204 2.2004 28 1 3.8193 0.3088 1.2957 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401550190.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:28 Heat of formation + Delta-G solvation = -129.958538 kcal Electronic energy + Delta-G solvation = -12369.564875 eV Core-core repulsion = 10191.254438 eV Total energy + Delta-G solvation = -2178.310437 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.62889 -37.66411 -34.47217 -34.01748 -32.44003 -28.57379 -26.97894 -24.86697 -22.77419 -20.96339 -19.05076 -17.67030 -17.08558 -16.87354 -16.16381 -15.60631 -14.89887 -14.72127 -14.03636 -13.92488 -13.59815 -13.22379 -13.05529 -12.79456 -12.59882 -12.18915 -11.87516 -11.63586 -11.57709 -10.96680 -10.85100 -10.48513 -9.83273 -8.29379 -6.39852 1.46514 1.49469 1.70185 2.45594 2.94274 3.04773 3.66416 3.96833 4.10856 4.25766 4.34851 4.42175 4.57596 4.66885 4.81220 4.89737 4.91950 5.01156 5.22159 5.32663 5.43838 5.52492 5.67548 6.15840 6.44043 6.69199 6.99623 7.36357 8.84468 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052209 B = 0.016381 C = 0.015447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.173559 B = 1708.865361 C = 1812.182695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.079 3.921 3 H 0.071 0.929 4 C -0.133 4.133 5 C -0.108 4.108 6 C 0.182 3.818 7 O -0.568 6.568 8 C -0.530 4.530 9 H 0.038 0.962 10 C 0.016 3.984 11 N -0.945 5.945 12 Si 1.005 2.995 13 H -0.282 1.282 14 H -0.340 1.340 15 H -0.260 1.260 16 C 0.059 3.941 17 O -0.394 6.394 18 H 0.069 0.931 19 H 0.095 0.905 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.381 0.619 26 H 0.263 0.737 27 H 0.084 0.916 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 12.008 -0.185 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.022 3.978 3 H 0.089 0.911 4 C -0.171 4.171 5 C -0.146 4.146 6 C 0.143 3.857 7 O -0.377 6.377 8 C -0.568 4.568 9 H 0.056 0.944 10 C -0.182 4.182 11 N -0.584 5.584 12 Si 0.839 3.161 13 H -0.209 1.209 14 H -0.273 1.273 15 H -0.186 1.186 16 C -0.018 4.018 17 O -0.313 6.313 18 H 0.088 0.912 19 H 0.113 0.887 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.110 0.890 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.230 0.770 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.826 12.030 -0.655 12.185 hybrid contribution 0.875 -0.859 -0.008 1.226 sum -0.950 11.171 -0.663 11.231 Atomic orbital electron populations 1.21751 0.91872 1.02295 1.03544 1.22303 0.96077 0.94751 0.84656 0.91142 1.22075 0.94677 1.01228 0.99119 1.21722 0.96271 0.99092 0.97466 1.19899 0.77901 0.93817 0.94101 1.86070 1.22992 1.85912 1.42737 1.21459 1.07515 0.92168 1.35636 0.94396 1.25886 1.01528 0.94346 0.96402 1.70113 1.41761 1.01092 1.45462 0.84803 0.78886 0.75292 0.77075 1.20862 1.27310 1.18580 1.23060 0.81150 0.98830 0.98769 1.87853 1.21107 1.78823 1.43548 0.91238 0.88652 0.93615 0.93279 0.89030 0.91761 0.93446 0.76981 0.92834 0.89792 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.56 71.98 0.69 -3.02 15 2 C 0.08 2.62 3.26 30.63 0.10 2.72 15 3 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 4 C -0.13 -4.90 5.16 30.69 0.16 -4.74 15 5 C -0.11 -4.43 4.84 30.71 0.15 -4.28 15 6 C 0.18 8.20 0.72 -11.45 -0.01 8.19 15 7 O -0.57 -24.14 8.48 -148.98 -1.26 -25.40 15 8 C -0.53 -29.73 7.48 25.60 0.19 -29.54 15 9 H 0.04 2.43 7.82 -2.91 -0.02 2.41 15 10 C 0.02 0.95 5.46 84.66 0.46 1.42 15 11 N -0.94 -59.78 13.96 21.45 0.30 -59.48 15 12 Si 1.01 49.98 24.28 68.60 1.67 51.64 15 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 14 H -0.34 -17.46 7.11 99.48 0.71 -16.75 15 15 H -0.26 -12.44 5.38 99.48 0.54 -11.91 15 16 C 0.06 2.31 5.83 72.01 0.42 2.73 15 17 O -0.39 -16.00 9.93 -148.98 -1.48 -17.48 15 18 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 19 H 0.09 1.96 8.14 -2.38 -0.02 1.94 15 20 H 0.04 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.05 2.16 7.39 -2.39 -0.02 2.15 15 22 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.05 2.13 5.71 -2.39 -0.01 2.12 15 25 H 0.38 14.06 8.96 -74.05 -0.66 13.39 15 26 H 0.26 15.77 8.31 -92.71 -0.77 15.00 15 27 H 0.08 3.24 8.14 -2.39 -0.02 3.22 15 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 Total: -1.00 -68.03 221.88 1.69 -66.35 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.31 Total: 10.92 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 2.16 Total: -26.54 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.30 Total: -59.48 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -2.74 Total: -42.89 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.67 Total: 51.64 kcal Total: -68.03 1.69 -66.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401550190.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.612 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds