Wall clock time and date at job start Mon Mar 30 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49218 * 2 1 4 4 C 1.53090 * 109.48254 * 120.03508 * 2 1 3 5 5 C 1.53181 * 109.16481 * 177.59218 * 4 2 1 6 6 C 1.53186 * 109.02951 * 303.01710 * 5 4 2 7 7 O 1.42893 * 109.52086 * 297.00775 * 6 5 4 8 8 C 1.50700 * 109.51913 * 176.88691 * 6 5 4 9 9 H 1.08009 * 120.00006 * 359.97438 * 8 6 5 10 10 C 1.37872 * 120.00151 * 179.97438 * 8 6 5 11 11 N 1.31512 * 119.99985 * 0.02562 * 10 8 6 12 12 Si 1.86804 * 120.00313 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46933 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47343 * 119.99721 * 12 10 8 15 15 H 1.48502 * 109.47103 * 240.00376 * 12 10 8 16 16 C 1.53087 * 109.16665 * 56.98173 * 6 5 4 17 17 O 1.42905 * 109.41504 * 302.39123 * 16 6 5 18 18 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.46593 * 300.02577 * 1 2 3 20 20 H 1.08999 * 109.47247 * 60.02300 * 1 2 3 21 21 H 1.09007 * 109.51738 * 297.49294 * 4 2 1 22 22 H 1.08997 * 109.52670 * 57.61771 * 4 2 1 23 23 H 1.08997 * 109.54268 * 62.87505 * 5 4 2 24 24 H 1.08993 * 109.54386 * 183.06408 * 5 4 2 25 25 H 0.96703 * 113.99899 * 179.97438 * 7 6 5 26 26 H 0.97006 * 120.00065 * 180.02562 * 11 10 8 27 27 H 1.08994 * 109.48330 * 182.40659 * 16 6 5 28 28 H 1.09001 * 109.48123 * 62.37055 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 1.2494 5 6 3.5712 -0.7710 1.2120 6 6 4.0176 -1.4601 -0.0812 7 8 3.5517 -2.8110 -0.0877 8 6 5.5221 -1.4459 -0.1659 9 1 6.1031 -0.9909 0.6228 10 6 6.1570 -2.0138 -1.2500 11 7 5.4496 -2.5675 -2.2105 12 14 8.0220 -1.9969 -1.3547 13 1 8.5789 -1.3185 -0.1566 14 1 8.5272 -3.3919 -1.4137 15 1 8.4426 -1.2658 -2.5770 16 6 3.4307 -0.7093 -1.2792 17 8 2.0065 -0.6741 -1.1665 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3632 0.5143 0.8898 20 1 -0.3634 0.5135 -0.8902 21 1 1.7149 -0.1844 2.1398 22 1 1.6435 -1.7372 1.2714 23 1 3.9690 0.2434 1.2406 24 1 3.9393 -1.3315 2.0713 25 1 3.7984 -3.3083 -0.8795 26 1 5.8962 -2.9673 -2.9731 27 1 3.7098 -1.2202 -2.2007 28 1 3.8192 0.3089 -1.2959 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401550192.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:29 Heat of formation + Delta-G solvation = -133.220848 kcal Electronic energy + Delta-G solvation = -12259.540358 eV Core-core repulsion = 10081.088457 eV Total energy + Delta-G solvation = -2178.451901 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40957 -37.10362 -34.28438 -33.94703 -32.22504 -28.78155 -26.60004 -24.75166 -22.66104 -20.76099 -19.00472 -17.60180 -16.97836 -16.43511 -15.89678 -15.32059 -15.04963 -14.33194 -14.15153 -13.66607 -13.17482 -13.10635 -12.84829 -12.77995 -12.44513 -12.27736 -12.12027 -11.86365 -11.34295 -11.10613 -10.82562 -10.48914 -9.65267 -8.23393 -6.42914 1.38867 1.41815 1.53035 2.36277 2.94148 3.19654 3.90690 4.13496 4.16677 4.26335 4.43450 4.54664 4.72402 4.86306 4.89216 4.96842 4.99513 5.15581 5.31572 5.35741 5.51812 5.57359 5.87276 6.07116 6.52427 6.69483 7.30173 7.45991 8.79217 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.074405 B = 0.012794 C = 0.012202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.230274 B = 2188.003150 C = 2294.147811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.073 3.927 3 H 0.054 0.946 4 C -0.136 4.136 5 C -0.103 4.103 6 C 0.209 3.791 7 O -0.592 6.592 8 C -0.566 4.566 9 H 0.057 0.943 10 C 0.026 3.974 11 N -0.916 5.916 12 Si 0.966 3.034 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.275 1.275 16 C 0.052 3.948 17 O -0.407 6.407 18 H 0.053 0.947 19 H 0.095 0.905 20 H 0.063 0.937 21 H 0.091 0.909 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.372 0.628 26 H 0.272 0.728 27 H 0.095 0.905 28 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 4.778 3.303 7.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 H 0.072 0.928 4 C -0.174 4.174 5 C -0.141 4.141 6 C 0.169 3.831 7 O -0.400 6.400 8 C -0.604 4.604 9 H 0.075 0.925 10 C -0.174 4.174 11 N -0.556 5.556 12 Si 0.791 3.209 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.201 1.201 16 C -0.025 4.025 17 O -0.327 6.327 18 H 0.072 0.928 19 H 0.114 0.886 20 H 0.082 0.918 21 H 0.110 0.890 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.221 0.779 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.091 4.796 3.590 7.862 hybrid contribution 1.619 -0.280 -0.672 1.775 sum -3.472 4.516 2.918 6.400 Atomic orbital electron populations 1.21739 0.91401 1.02622 1.03333 1.22308 0.96317 0.94502 0.85335 0.92789 1.22115 0.95367 1.01116 0.98782 1.21531 0.95875 0.99441 0.97231 1.19428 0.91313 0.80411 0.91916 1.86097 1.80374 1.26449 1.47093 1.22046 0.93042 1.38842 1.06509 0.92521 1.25803 1.03429 0.93597 0.94534 1.69683 1.37140 1.38420 1.10396 0.85387 0.79466 0.77905 0.78112 1.19489 1.20430 1.20083 1.23249 0.78599 0.98225 1.02383 1.87816 1.22575 1.78560 1.43737 0.92779 0.88593 0.91795 0.89038 0.92743 0.91367 0.92966 0.77945 0.91834 0.88739 0.95341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.56 71.98 0.69 -3.05 15 2 C 0.07 2.66 3.26 30.63 0.10 2.76 15 3 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 4 C -0.14 -5.04 5.26 30.68 0.16 -4.88 15 5 C -0.10 -4.52 4.98 30.72 0.15 -4.37 15 6 C 0.21 10.81 0.69 -11.45 -0.01 10.81 15 7 O -0.59 -32.75 12.39 -141.94 -1.76 -34.50 15 8 C -0.57 -31.10 8.25 25.60 0.21 -30.89 15 9 H 0.06 3.08 7.75 -2.91 -0.02 3.06 15 10 C 0.03 1.40 5.22 84.65 0.44 1.84 15 11 N -0.92 -49.85 9.73 21.45 0.21 -49.64 15 12 Si 0.97 42.38 29.54 68.60 2.03 44.41 15 13 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 15 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 16 C 0.05 2.63 5.52 72.01 0.40 3.03 15 17 O -0.41 -18.86 10.34 -141.94 -1.47 -20.33 15 18 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 19 H 0.10 2.02 8.14 -2.39 -0.02 2.00 15 20 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.09 2.65 8.14 -2.38 -0.02 2.63 15 22 H 0.05 2.20 7.83 -2.39 -0.02 2.18 15 23 H 0.07 2.79 8.14 -2.39 -0.02 2.77 15 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.37 21.16 7.14 -74.06 -0.53 20.63 15 26 H 0.27 13.95 8.31 -92.70 -0.77 13.18 15 27 H 0.09 5.23 6.17 -2.39 -0.01 5.22 15 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 15 Total: -1.00 -59.50 228.40 1.77 -57.73 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.61 Total: 27.07 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 2.15 Total: -24.74 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.21 Total: -49.64 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -3.23 Total: -54.83 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -59.50 1.77 -57.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401550192.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.491 kcal (2) G-P(sol) polarization free energy of solvation -59.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds