Wall clock time and date at job start Mon Mar 30 2020 02:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.32890 * 2 1 4 4 O 1.44424 * 110.37074 * 237.75056 * 2 1 3 5 5 C 1.44423 * 105.27467 * 200.65718 * 4 2 1 6 6 C 1.54479 * 104.80355 * 40.51405 * 5 4 2 7 7 O 1.42899 * 110.51033 * 217.24309 * 6 5 4 8 8 C 1.50693 * 110.51191 * 94.66653 * 6 5 4 9 9 H 1.08003 * 119.99839 * 245.95904 * 8 6 5 10 10 C 1.37881 * 120.00101 * 65.95475 * 8 6 5 11 11 N 1.31513 * 119.99751 * 353.33871 * 10 8 6 12 12 Si 1.86799 * 119.99800 * 173.33076 * 10 8 6 13 13 H 1.48499 * 109.47174 * 270.00066 * 12 10 8 14 14 H 1.48493 * 109.47428 * 30.00473 * 12 10 8 15 15 H 1.48504 * 109.46893 * 150.00555 * 12 10 8 16 16 C 1.54513 * 104.18216 * 335.95422 * 6 5 4 17 17 H 1.08997 * 110.51439 * 118.71626 * 16 6 5 18 18 C 1.53005 * 110.50623 * 241.42717 * 16 6 5 19 19 H 1.08997 * 109.47064 * 180.79639 * 1 2 3 20 20 H 1.09001 * 109.47171 * 300.79190 * 1 2 3 21 21 H 1.09003 * 109.47186 * 60.79443 * 1 2 3 22 22 H 1.08999 * 110.37015 * 281.68022 * 5 4 2 23 23 H 1.09001 * 110.37044 * 159.34429 * 5 4 2 24 24 H 0.96707 * 113.99775 * 302.75812 * 7 6 5 25 25 H 0.96999 * 119.99985 * 354.41965 * 11 10 8 26 26 H 1.08998 * 109.47603 * 60.00019 * 18 16 6 27 27 H 1.09004 * 109.46632 * 180.02562 * 18 16 6 28 28 H 1.09000 * 109.46685 * 299.99520 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7225 -1.1451 5 6 3.3873 -1.0863 -0.8007 6 6 3.3178 -1.5065 0.6843 7 8 4.4901 -1.0794 1.3809 8 6 3.1487 -2.9992 0.8033 9 1 2.2370 -3.4084 1.2129 10 6 4.1579 -3.8425 0.3892 11 7 5.2110 -3.3538 -0.2287 12 14 4.0294 -5.6789 0.7061 13 1 4.6404 -5.9982 2.0214 14 1 2.6000 -6.0811 0.7135 15 1 4.7459 -6.4173 -0.3647 16 6 2.0692 -0.7753 1.2265 17 1 1.3298 -1.4935 1.5807 18 6 2.4587 0.1919 2.3463 19 1 -0.3633 -1.0275 0.0143 20 1 -0.3633 0.5261 0.8828 21 1 -0.3634 0.5015 -0.8970 22 1 4.0524 -0.2314 -0.9224 23 1 3.7241 -1.9208 -1.4158 24 1 5.3155 -1.4125 1.0029 25 1 5.2417 -2.4136 -0.4652 26 1 3.1616 0.9302 1.9607 27 1 1.5666 0.6974 2.7162 28 1 2.9249 -0.3635 3.1601 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405668814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:28 Heat of formation + Delta-G solvation = -106.970882 kcal Electronic energy + Delta-G solvation = -12351.378682 eV Core-core repulsion = 10174.065065 eV Total energy + Delta-G solvation = -2177.313617 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.13163 -35.41792 -32.73766 -32.03949 -29.74014 -27.09225 -24.86210 -23.37210 -20.78196 -19.26532 -17.94993 -15.68930 -14.83516 -14.56496 -13.92012 -13.79066 -13.60004 -12.99146 -12.23158 -12.12388 -11.85390 -11.61109 -11.12510 -10.82831 -10.73932 -10.47730 -10.28113 -10.16966 -9.97127 -9.23462 -8.97463 -8.54249 -8.06755 -6.51656 -4.31659 3.37963 3.40128 3.56751 4.40546 4.65745 5.07532 5.37483 5.47843 5.65015 5.78009 5.97972 5.99598 6.06757 6.19221 6.29742 6.36572 6.53114 6.55111 6.72129 6.92423 6.99005 7.11476 7.67700 7.93446 8.23416 8.60023 8.99116 9.38134 10.77631 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.048219 B = 0.015003 C = 0.014392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.545169 B = 1865.852913 C = 1945.035003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.055 0.945 4 O -0.374 6.374 5 C 0.018 3.982 6 C 0.211 3.789 7 O -0.579 6.579 8 C -0.599 4.599 9 H 0.058 0.942 10 C 0.027 3.973 11 N -0.911 5.911 12 Si 1.073 2.927 13 H -0.285 1.285 14 H -0.287 1.287 15 H -0.283 1.283 16 C -0.102 4.102 17 H 0.081 0.919 18 C -0.120 4.120 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.033 0.967 23 H 0.097 0.903 24 H 0.367 0.633 25 H 0.266 0.734 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 4.404 1.459 6.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.073 0.927 4 O -0.293 6.293 5 C -0.059 4.059 6 C 0.172 3.828 7 O -0.387 6.387 8 C -0.637 4.637 9 H 0.076 0.924 10 C -0.176 4.176 11 N -0.551 5.551 12 Si 0.901 3.099 13 H -0.212 1.212 14 H -0.213 1.213 15 H -0.209 1.209 16 C -0.121 4.121 17 H 0.099 0.901 18 C -0.178 4.178 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.115 0.885 24 H 0.216 0.784 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.650 3.250 1.481 5.863 hybrid contribution -0.266 1.192 -0.100 1.225 sum -4.916 4.442 1.381 6.768 Atomic orbital electron populations 1.21761 0.94256 1.02578 1.01257 1.23033 0.94378 0.94802 0.86587 0.92664 1.89027 1.28279 1.74524 1.37484 1.24450 0.82691 0.98052 1.00701 1.20154 0.82889 0.93562 0.86218 1.86325 1.16935 1.76266 1.59167 1.22445 1.05556 0.90518 1.45143 0.92412 1.25955 0.92185 1.06760 0.92724 1.70949 1.29589 1.16692 1.37909 0.83485 0.75647 0.74043 0.76757 1.21159 1.21323 1.20873 1.22533 0.97697 0.97001 0.94866 0.90094 1.21417 0.99223 0.98584 0.98552 0.91846 0.91854 0.92636 0.94890 0.88489 0.78440 0.92051 0.93055 0.94473 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.53 37.16 0.35 -1.95 15 2 C 0.07 1.40 3.48 -25.78 -0.09 1.31 15 3 H 0.06 1.05 7.84 -51.93 -0.41 0.64 15 4 O -0.37 -8.83 11.34 -35.23 -0.40 -9.23 15 5 C 0.02 0.45 5.76 37.93 0.22 0.67 15 6 C 0.21 5.35 1.01 -90.20 -0.09 5.26 15 7 O -0.58 -14.70 11.27 -35.23 -0.40 -15.10 15 8 C -0.60 -16.68 8.23 -34.44 -0.28 -16.97 15 9 H 0.06 1.62 7.39 -52.48 -0.39 1.24 15 10 C 0.03 0.75 5.11 -17.82 -0.09 0.65 15 11 N -0.91 -25.76 12.49 55.43 0.69 -25.07 15 12 Si 1.07 24.69 29.91 -169.99 -5.08 19.61 15 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 14 H -0.29 -6.37 7.11 56.52 0.40 -5.96 15 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 16 C -0.10 -2.24 2.91 -88.88 -0.26 -2.50 15 17 H 0.08 1.81 7.19 -51.93 -0.37 1.44 15 18 C -0.12 -2.32 8.21 37.16 0.30 -2.01 15 19 H 0.06 1.07 8.13 -51.93 -0.42 0.65 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.03 0.77 8.09 -51.93 -0.42 0.35 15 23 H 0.10 2.57 6.30 -51.93 -0.33 2.25 15 24 H 0.37 9.28 6.66 45.56 0.30 9.59 15 25 H 0.27 7.30 4.32 -40.82 -0.18 7.12 15 26 H 0.05 0.98 7.86 -51.93 -0.41 0.57 15 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 28 H 0.06 1.23 7.91 -51.93 -0.41 0.82 15 LS Contribution 226.69 15.07 3.42 3.42 Total: -1.00 -29.42 226.69 -4.80 -34.22 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -3.09 Total: 7.67 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 0.06 Total: -15.53 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.69 Total: -25.07 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.80 Total: -24.33 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.42 -4.80 -34.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405668814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.746 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds