Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.45416 * 2 1 4 4 C 1.54472 * 110.50992 * 237.24629 * 2 1 3 5 5 H 1.09007 * 110.37121 * 146.39368 * 4 2 1 6 6 C 1.53001 * 110.37693 * 24.16641 * 4 2 1 7 7 O 1.44425 * 104.80190 * 265.32949 * 4 2 1 8 8 C 1.44421 * 105.27967 * 319.48952 * 7 4 2 9 9 C 1.54487 * 104.79872 * 40.51065 * 8 7 4 10 10 O 1.42903 * 110.51036 * 94.66947 * 9 8 7 11 11 C 1.50695 * 110.50852 * 217.37444 * 9 8 7 12 12 H 1.08003 * 120.00097 * 118.54609 * 11 9 8 13 13 C 1.37881 * 120.00535 * 298.54972 * 11 9 8 14 14 N 1.31523 * 119.99507 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00399 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47241 * 89.99773 * 15 13 11 17 17 H 1.48502 * 109.47061 * 209.99917 * 15 13 11 18 18 H 1.48503 * 109.46958 * 329.99648 * 15 13 11 19 19 H 1.09006 * 109.47396 * 297.39197 * 1 2 3 20 20 H 1.09004 * 109.47279 * 57.39843 * 1 2 3 21 21 H 1.09006 * 109.47549 * 177.39675 * 1 2 3 22 22 H 1.08997 * 109.46897 * 59.99558 * 6 4 2 23 23 H 1.08997 * 109.47526 * 180.02562 * 6 4 2 24 24 H 1.09007 * 109.46453 * 300.00194 * 6 4 2 25 25 H 1.08997 * 110.37554 * 281.67915 * 8 7 4 26 26 H 1.09004 * 110.37353 * 159.34062 * 8 7 4 27 27 H 0.96701 * 114.00437 * 61.45088 * 10 9 8 28 28 H 0.96996 * 119.99644 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0712 -0.7828 -1.2168 5 1 3.0013 -0.3380 -1.5709 6 6 1.0322 -0.8070 -2.3397 7 8 2.3070 -2.1186 -0.7210 8 6 2.8757 -1.9414 0.5947 9 6 2.0713 -0.7797 1.2191 10 8 0.9932 -1.2851 2.0093 11 6 2.9707 0.0983 2.0505 12 1 3.1021 1.1380 1.7893 13 6 3.6260 -0.4257 3.1447 14 7 3.4656 -1.6917 3.4631 15 14 4.7403 0.6628 4.1757 16 1 3.9489 1.2926 5.2630 17 1 5.8266 -0.1594 4.7665 18 1 5.3312 1.7206 3.3171 19 1 -0.3634 0.4728 0.9125 20 1 -0.3634 0.5537 -0.8658 21 1 -0.3634 -1.0266 -0.0467 22 1 0.8051 0.2140 -2.6465 23 1 1.4286 -1.3625 -3.1895 24 1 0.1226 -1.2899 -1.9825 25 1 3.9301 -1.6756 0.5196 26 1 2.7535 -2.8487 1.1863 27 1 1.2749 -1.8331 2.7545 28 1 3.9263 -2.0602 4.2330 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405668816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = -107.592949 kcal Electronic energy + Delta-G solvation = -12328.068463 eV Core-core repulsion = 10150.727871 eV Total energy + Delta-G solvation = -2177.340592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.92670 -34.86415 -32.66733 -32.11481 -29.38027 -27.03627 -24.57019 -24.03145 -20.47218 -18.67382 -17.18105 -15.57777 -15.02143 -14.66357 -14.21068 -13.85349 -12.96051 -12.49331 -12.02888 -11.78783 -11.72945 -11.45031 -11.11595 -10.93171 -10.77555 -10.57464 -10.42310 -9.95842 -9.64278 -9.31185 -8.73321 -8.54063 -8.01507 -6.26454 -4.33830 3.20583 3.27723 3.30749 4.26991 4.91309 5.01492 5.54033 5.62424 5.80624 6.01559 6.09954 6.13038 6.33782 6.39047 6.54555 6.63215 6.70438 6.81928 6.99461 7.16286 7.22280 7.48179 7.76071 7.80371 8.16507 8.70255 9.34864 9.48593 10.81479 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059346 B = 0.013876 C = 0.013626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.693977 B = 2017.396175 C = 2054.422162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.109 4.109 3 H 0.075 0.925 4 C 0.074 3.926 5 H 0.055 0.945 6 C -0.143 4.143 7 O -0.394 6.394 8 C 0.041 3.959 9 C 0.232 3.768 10 O -0.580 6.580 11 C -0.536 4.536 12 H 0.063 0.937 13 C 0.068 3.932 14 N -0.898 5.898 15 Si 0.902 3.098 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.273 1.273 19 H 0.054 0.946 20 H 0.035 0.965 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.377 0.623 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 1.820 -5.229 5.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.128 4.128 3 H 0.094 0.906 4 C 0.016 3.984 5 H 0.073 0.927 6 C -0.200 4.200 7 O -0.314 6.314 8 C -0.035 4.035 9 C 0.192 3.808 10 O -0.388 6.388 11 C -0.574 4.574 12 H 0.081 0.919 13 C -0.134 4.134 14 N -0.538 5.538 15 Si 0.729 3.271 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.198 1.198 19 H 0.073 0.927 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.227 0.773 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.208 1.813 -5.646 6.328 hybrid contribution 1.226 0.392 1.242 1.789 sum -0.982 2.205 -4.404 5.022 Atomic orbital electron populations 1.21452 0.95018 1.01284 0.99684 1.22520 0.96400 0.99254 0.94635 0.90649 1.22857 0.96673 0.84660 0.94238 0.92689 1.21842 0.99464 1.01287 0.97379 1.88970 1.83683 1.25406 1.33336 1.24176 0.96918 1.01089 0.81345 1.19833 0.83989 0.89283 0.87710 1.86165 1.35614 1.71629 1.45369 1.21692 1.26733 0.97029 1.11953 0.91921 1.25065 0.96089 0.95173 0.97063 1.69694 1.43780 1.12430 1.27869 0.86427 0.80023 0.80325 0.80278 1.20402 1.21024 1.19775 0.92743 0.94632 0.92605 0.91946 0.93090 0.91635 0.92991 0.89619 0.77345 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 6.97 37.16 0.26 -2.07 15 2 C -0.11 -2.40 3.27 -89.06 -0.29 -2.69 15 3 H 0.08 1.62 7.46 -51.93 -0.39 1.24 15 4 C 0.07 1.50 3.84 -25.96 -0.10 1.40 15 5 H 0.06 1.07 8.14 -51.92 -0.42 0.65 15 6 C -0.14 -2.32 8.42 37.16 0.31 -2.01 15 7 O -0.39 -9.25 11.34 -35.23 -0.40 -9.65 15 8 C 0.04 1.03 5.95 37.94 0.23 1.26 15 9 C 0.23 5.89 1.04 -90.20 -0.09 5.79 15 10 O -0.58 -15.17 11.31 -35.23 -0.40 -15.57 15 11 C -0.54 -14.45 8.14 -34.44 -0.28 -14.73 15 12 H 0.06 1.67 7.39 -52.48 -0.39 1.29 15 13 C 0.07 1.81 5.27 -17.81 -0.09 1.72 15 14 N -0.90 -24.05 10.89 55.43 0.60 -23.44 15 15 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 19 H 0.05 1.13 7.91 -51.93 -0.41 0.72 15 20 H 0.03 0.58 7.05 -51.93 -0.37 0.22 15 21 H 0.05 1.15 7.22 -51.93 -0.37 0.78 15 22 H 0.06 0.87 7.78 -51.93 -0.40 0.47 15 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.06 1.09 6.58 -51.93 -0.34 0.75 15 25 H 0.05 1.33 7.86 -51.93 -0.41 0.93 15 26 H 0.09 2.22 7.89 -51.93 -0.41 1.81 15 27 H 0.38 9.99 7.39 45.56 0.34 10.33 15 28 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 LS Contribution 226.42 15.07 3.41 3.41 Total: -1.00 -27.74 226.42 -5.00 -32.74 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.13 Total: 8.22 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.06 Total: -11.34 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.60 Total: -23.44 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.80 Total: -25.21 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -27.74 -5.00 -32.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405668816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.855 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds