Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.45416 * 2 1 4 4 C 1.54472 * 110.50992 * 237.24629 * 2 1 3 5 5 H 1.09007 * 110.37121 * 146.39368 * 4 2 1 6 6 C 1.53001 * 110.37693 * 24.16641 * 4 2 1 7 7 O 1.44425 * 104.80190 * 265.32949 * 4 2 1 8 8 C 1.44421 * 105.27967 * 319.48952 * 7 4 2 9 9 C 1.54487 * 104.79872 * 40.51065 * 8 7 4 10 10 O 1.42903 * 110.51036 * 94.66947 * 9 8 7 11 11 C 1.50695 * 110.50852 * 217.37444 * 9 8 7 12 12 H 1.08003 * 120.00097 * 118.54609 * 11 9 8 13 13 C 1.37881 * 120.00535 * 298.54972 * 11 9 8 14 14 N 1.31523 * 119.99507 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00399 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47241 * 89.99773 * 15 13 11 17 17 H 1.48502 * 109.47061 * 209.99917 * 15 13 11 18 18 H 1.48503 * 109.46958 * 329.99648 * 15 13 11 19 19 H 1.09006 * 109.47396 * 297.39197 * 1 2 3 20 20 H 1.09004 * 109.47279 * 57.39843 * 1 2 3 21 21 H 1.09006 * 109.47549 * 177.39675 * 1 2 3 22 22 H 1.08997 * 109.46897 * 59.99558 * 6 4 2 23 23 H 1.08997 * 109.47526 * 180.02562 * 6 4 2 24 24 H 1.09007 * 109.46453 * 300.00194 * 6 4 2 25 25 H 1.08997 * 110.37554 * 281.67915 * 8 7 4 26 26 H 1.09004 * 110.37353 * 159.34062 * 8 7 4 27 27 H 0.96701 * 114.00437 * 61.45088 * 10 9 8 28 28 H 0.96996 * 119.99644 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0712 -0.7828 -1.2168 5 1 3.0013 -0.3380 -1.5709 6 6 1.0322 -0.8070 -2.3397 7 8 2.3070 -2.1186 -0.7210 8 6 2.8757 -1.9414 0.5947 9 6 2.0713 -0.7797 1.2191 10 8 0.9932 -1.2851 2.0093 11 6 2.9707 0.0983 2.0505 12 1 3.1021 1.1380 1.7893 13 6 3.6260 -0.4257 3.1447 14 7 3.4656 -1.6917 3.4631 15 14 4.7403 0.6628 4.1757 16 1 3.9489 1.2926 5.2630 17 1 5.8266 -0.1594 4.7665 18 1 5.3312 1.7206 3.3171 19 1 -0.3634 0.4728 0.9125 20 1 -0.3634 0.5537 -0.8658 21 1 -0.3634 -1.0266 -0.0467 22 1 0.8051 0.2140 -2.6465 23 1 1.4286 -1.3625 -3.1895 24 1 0.1226 -1.2899 -1.9825 25 1 3.9301 -1.6756 0.5196 26 1 2.7535 -2.8487 1.1863 27 1 1.2749 -1.8331 2.7545 28 1 3.9263 -2.0602 4.2330 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405668816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = -127.354615 kcal Electronic energy + Delta-G solvation = -12328.925393 eV Core-core repulsion = 10150.727871 eV Total energy + Delta-G solvation = -2178.197522 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.73879 -36.82098 -34.43764 -34.08718 -31.12383 -28.77392 -26.57208 -25.67362 -22.32495 -20.40874 -19.18053 -17.39833 -16.97093 -16.49347 -16.04034 -15.67235 -14.66399 -14.26356 -13.79438 -13.60067 -13.34576 -13.19723 -12.84778 -12.57498 -12.54851 -12.38440 -12.20908 -11.75015 -11.38390 -11.08955 -10.69801 -10.46837 -10.01854 -8.27648 -6.43166 1.39583 1.41380 1.51038 2.35636 2.98218 3.20036 3.88033 3.97681 4.18532 4.28277 4.52321 4.60927 4.77640 4.83812 4.85477 4.96504 5.09432 5.15305 5.30087 5.40894 5.42920 5.60246 5.76320 5.95386 6.18503 6.65435 7.28593 7.39644 8.78941 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059346 B = 0.013876 C = 0.013626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.693977 B = 2017.396175 C = 2054.422162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.067 3.933 5 H 0.063 0.937 6 C -0.136 4.136 7 O -0.404 6.404 8 C 0.053 3.947 9 C 0.215 3.785 10 O -0.584 6.584 11 C -0.561 4.561 12 H 0.059 0.941 13 C 0.026 3.974 14 N -0.915 5.915 15 Si 0.964 3.036 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.269 1.269 19 H 0.038 0.962 20 H 0.075 0.925 21 H 0.043 0.957 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.371 0.629 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 2.815 -6.098 6.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 H 0.096 0.904 4 C 0.010 3.990 5 H 0.081 0.919 6 C -0.193 4.193 7 O -0.325 6.325 8 C -0.024 4.024 9 C 0.176 3.824 10 O -0.392 6.392 11 C -0.599 4.599 12 H 0.077 0.923 13 C -0.174 4.174 14 N -0.555 5.555 15 Si 0.789 3.211 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.193 1.193 19 H 0.057 0.943 20 H 0.094 0.906 21 H 0.062 0.938 22 H 0.111 0.889 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.219 0.781 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.317 2.811 -6.533 7.480 hybrid contribution 1.255 0.072 1.492 1.951 sum -1.062 2.883 -5.040 5.903 Atomic orbital electron populations 1.21380 0.93403 1.00968 1.00734 1.22577 0.97845 0.99038 0.93711 0.90422 1.23157 0.98371 0.82774 0.94738 0.91943 1.21846 0.97840 1.03508 0.96082 1.88950 1.83517 1.27612 1.32390 1.23871 0.96204 1.00166 0.82183 1.20080 0.84066 0.89605 0.88683 1.86166 1.36158 1.71549 1.45282 1.21941 1.27802 0.97160 1.12974 0.92304 1.25795 0.97228 0.96401 0.97994 1.69781 1.44097 1.13498 1.28097 0.85465 0.78273 0.78724 0.78639 1.20130 1.20511 1.19336 0.94280 0.90647 0.93833 0.88942 0.91547 0.91965 0.94368 0.91452 0.78064 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.07 6.97 71.98 0.50 -3.57 15 2 C -0.11 -4.81 3.27 -9.78 -0.03 -4.84 15 3 H 0.08 3.23 7.46 -2.38 -0.02 3.22 15 4 C 0.07 2.59 3.84 31.09 0.12 2.71 15 5 H 0.06 2.31 8.14 -2.38 -0.02 2.29 15 6 C -0.14 -3.95 8.42 71.98 0.61 -3.34 15 7 O -0.40 -18.74 11.34 -148.98 -1.69 -20.43 15 8 C 0.05 2.67 5.95 72.49 0.43 3.10 15 9 C 0.22 10.98 1.04 -10.52 -0.01 10.96 15 10 O -0.58 -30.96 11.31 -148.98 -1.69 -32.65 15 11 C -0.56 -30.32 8.14 25.60 0.21 -30.11 15 12 H 0.06 3.14 7.39 -2.91 -0.02 3.12 15 13 C 0.03 1.40 5.27 84.65 0.45 1.84 15 14 N -0.92 -49.37 10.89 21.45 0.23 -49.14 15 15 Si 0.96 42.06 29.54 68.60 2.03 44.08 15 16 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 19 H 0.04 1.56 7.91 -2.38 -0.02 1.55 15 20 H 0.07 2.22 7.05 -2.38 -0.02 2.20 15 21 H 0.04 1.73 7.22 -2.38 -0.02 1.71 15 22 H 0.09 2.15 7.78 -2.39 -0.02 2.13 15 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.06 1.86 6.58 -2.38 -0.02 1.85 15 25 H 0.04 2.00 7.86 -2.39 -0.02 1.98 15 26 H 0.07 3.59 7.89 -2.38 -0.02 3.58 15 27 H 0.37 20.14 7.39 -74.06 -0.55 19.59 15 28 H 0.27 13.88 8.31 -92.71 -0.77 13.11 15 Total: -1.00 -58.20 226.42 1.75 -56.44 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.60 Total: 24.93 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 2.27 Total: -23.24 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.23 Total: -49.14 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -3.38 Total: -53.07 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -58.20 1.75 -56.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405668816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.911 kcal (2) G-P(sol) polarization free energy of solvation -58.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds