Wall clock time and date at job start Mon Mar 30 2020 02:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.87352 * 2 1 4 4 O 1.43745 * 109.87944 * 238.99038 * 2 1 3 5 5 C 1.44379 * 106.97511 * 213.91466 * 4 2 1 6 6 C 1.55002 * 103.49275 * 40.05778 * 5 4 2 7 7 O 1.42903 * 110.90731 * 81.17479 * 6 5 4 8 8 C 1.50700 * 110.90852 * 204.74194 * 6 5 4 9 9 H 1.08004 * 119.99511 * 20.96105 * 8 6 5 10 10 C 1.37871 * 120.00078 * 200.95669 * 8 6 5 11 11 N 1.31515 * 120.00066 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99961 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47326 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47070 * 120.00261 * 12 10 8 15 15 H 1.48496 * 109.47186 * 239.99756 * 12 10 8 16 16 C 1.54200 * 110.00452 * 121.07176 * 2 1 3 17 17 H 1.09005 * 110.50969 * 2.85380 * 16 2 1 18 18 C 1.52999 * 110.50580 * 240.18163 * 16 2 1 19 19 H 1.08995 * 109.47153 * 179.55862 * 1 2 3 20 20 H 1.09000 * 109.46975 * 299.55999 * 1 2 3 21 21 H 1.09003 * 109.47005 * 59.55773 * 1 2 3 22 22 H 1.09006 * 110.62067 * 281.55942 * 5 4 2 23 23 H 1.08995 * 110.62339 * 158.55831 * 5 4 2 24 24 H 0.96698 * 113.99764 * 64.32763 * 7 6 5 25 25 H 0.97001 * 120.00001 * 180.02562 * 11 10 8 26 26 H 1.08999 * 109.46683 * 309.98542 * 18 16 2 27 27 H 1.09001 * 109.47361 * 69.97814 * 18 16 2 28 28 H 1.08995 * 109.47165 * 189.98328 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6964 -1.1586 5 6 3.2398 -1.3603 -0.7674 6 6 2.9243 -1.8888 0.6551 7 8 2.1853 -3.1103 0.5930 8 6 4.1889 -2.0684 1.4548 9 1 5.0867 -1.5391 1.1715 10 6 4.1998 -2.9083 2.5481 11 7 3.1066 -3.5531 2.8929 12 14 5.7671 -3.1304 3.5398 13 1 6.8478 -2.3001 2.9501 14 1 5.5289 -2.7079 4.9434 15 1 6.1704 -4.5593 3.5148 16 6 2.0575 -0.7478 1.2411 17 1 1.2300 -1.1566 1.8210 18 6 2.9104 0.1830 2.1053 19 1 -0.3633 -1.0276 -0.0079 20 1 -0.3633 0.5070 0.8939 21 1 -0.3633 0.5207 -0.8860 22 1 4.0690 -0.6533 -0.7390 23 1 3.4612 -2.1862 -1.4433 24 1 2.6710 -3.8438 0.1916 25 1 3.1141 -4.1437 3.6623 26 1 3.6514 0.6814 1.4803 27 1 2.2707 0.9296 2.5758 28 1 3.4168 -0.3989 2.8754 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405668817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:30 Heat of formation + Delta-G solvation = -120.075133 kcal Electronic energy + Delta-G solvation = -12371.039484 eV Core-core repulsion = 10193.157624 eV Total energy + Delta-G solvation = -2177.881860 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.66875 -36.69720 -34.38309 -33.67882 -31.66171 -28.61707 -26.70304 -25.01226 -22.36494 -21.01789 -18.66592 -17.19514 -16.66949 -16.51824 -16.13645 -15.79334 -14.44981 -14.24159 -14.00286 -13.60150 -13.25358 -12.96478 -12.79771 -12.59842 -12.52585 -12.28371 -12.06333 -11.83737 -11.35906 -10.87746 -10.63974 -10.42938 -9.90299 -7.98537 -6.23310 1.40040 1.44751 1.53628 2.42006 3.12234 3.22290 3.81895 4.00870 4.27442 4.34282 4.55613 4.57572 4.75580 4.79688 4.84613 4.94321 5.07123 5.14539 5.30052 5.55637 5.64636 5.69841 5.77184 6.04916 6.19649 6.75310 7.37909 7.62711 8.97973 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.057707 B = 0.014778 C = 0.014357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.095148 B = 1894.221735 C = 1949.829371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.073 0.927 4 O -0.400 6.400 5 C 0.024 3.976 6 C 0.215 3.785 7 O -0.551 6.551 8 C -0.557 4.557 9 H 0.058 0.942 10 C 0.036 3.964 11 N -0.879 5.879 12 Si 0.942 3.058 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.102 4.102 17 H 0.050 0.950 18 C -0.108 4.108 19 H 0.042 0.958 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.356 0.644 25 H 0.255 0.745 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 5.452 -2.639 6.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.091 0.909 4 O -0.320 6.320 5 C -0.052 4.052 6 C 0.175 3.825 7 O -0.354 6.354 8 C -0.595 4.595 9 H 0.077 0.923 10 C -0.167 4.167 11 N -0.514 5.514 12 Si 0.768 3.232 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.121 4.121 17 H 0.068 0.932 18 C -0.165 4.165 19 H 0.061 0.939 20 H 0.099 0.901 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.200 0.800 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.033 5.707 -2.426 6.287 hybrid contribution 1.311 -0.810 0.592 1.651 sum 0.278 4.898 -1.834 5.237 Atomic orbital electron populations 1.21850 0.93154 1.01857 1.02835 1.22998 0.95685 0.95176 0.84851 0.90894 1.88699 1.40606 1.68472 1.34204 1.24313 0.86487 0.96140 0.98301 1.20329 0.89565 0.82916 0.89720 1.86401 1.43596 1.20559 1.84853 1.21550 0.96661 1.28257 1.13015 0.92336 1.25646 0.98178 0.95124 0.97783 1.70342 1.27926 1.27467 1.25705 0.85776 0.80876 0.77821 0.78749 1.19021 1.20982 1.20867 1.22381 0.98131 0.95668 0.95920 0.93191 1.21493 0.98466 0.97222 0.99309 0.93854 0.90051 0.91093 0.92251 0.89840 0.79980 0.93558 0.93139 0.92650 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.37 71.98 0.67 -3.98 15 2 C 0.07 2.73 3.71 31.00 0.12 2.84 15 3 H 0.07 2.54 7.67 -2.39 -0.02 2.52 15 4 O -0.40 -17.18 11.19 -148.98 -1.67 -18.85 15 5 C 0.02 1.05 6.89 72.67 0.50 1.55 15 6 C 0.22 10.52 1.04 -10.24 -0.01 10.51 15 7 O -0.55 -29.04 11.20 -148.98 -1.67 -30.71 15 8 C -0.56 -28.59 6.12 25.60 0.16 -28.44 15 9 H 0.06 2.96 7.74 -2.91 -0.02 2.94 15 10 C 0.04 1.90 4.99 84.65 0.42 2.32 15 11 N -0.88 -49.42 11.82 21.45 0.25 -49.16 15 12 Si 0.94 41.59 29.54 68.60 2.03 43.62 15 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 16 C -0.10 -4.57 2.99 -9.77 -0.03 -4.60 15 17 H 0.05 2.49 7.65 -2.38 -0.02 2.47 15 18 C -0.11 -4.39 8.18 71.98 0.59 -3.80 15 19 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.06 2.44 7.99 -2.38 -0.02 2.42 15 23 H 0.08 3.40 8.14 -2.39 -0.02 3.38 15 24 H 0.36 17.41 9.09 -74.06 -0.67 16.74 15 25 H 0.26 13.80 8.31 -92.71 -0.77 13.03 15 26 H 0.05 1.92 8.10 -2.39 -0.02 1.90 15 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 28 H 0.05 2.27 6.54 -2.39 -0.02 2.25 15 Total: -1.00 -59.20 232.16 1.83 -57.37 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.47 Total: 21.34 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 2.42 Total: -23.61 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.25 Total: -49.16 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -3.33 Total: -49.56 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -59.20 1.83 -57.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405668817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.710 kcal (2) G-P(sol) polarization free energy of solvation -59.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds