Wall clock time and date at job start Mon Mar 30 2020 02:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.56058 * 2 1 4 4 C 1.54476 * 110.50999 * 237.31886 * 2 1 3 5 5 H 1.09002 * 110.37213 * 146.50559 * 4 2 1 6 6 C 1.52997 * 110.37577 * 24.27767 * 4 2 1 7 7 O 1.44429 * 104.80503 * 265.33281 * 4 2 1 8 8 C 1.44429 * 105.27388 * 319.49103 * 7 4 2 9 9 C 1.54480 * 104.80354 * 40.50897 * 8 7 4 10 10 O 1.42898 * 110.62667 * 217.31719 * 9 8 7 11 11 C 1.50698 * 110.51088 * 94.66697 * 9 8 7 12 12 H 1.08008 * 119.99968 * 336.16598 * 11 9 8 13 13 C 1.37870 * 120.00177 * 156.16342 * 11 9 8 14 14 N 1.31519 * 120.00111 * 186.74068 * 13 11 9 15 15 Si 1.86796 * 120.00203 * 6.74223 * 13 11 9 16 16 H 1.48496 * 109.47392 * 274.41713 * 15 13 11 17 17 H 1.48504 * 109.46927 * 34.41609 * 15 13 11 18 18 H 1.48499 * 109.47606 * 154.41320 * 15 13 11 19 19 H 1.09002 * 109.46931 * 297.31923 * 1 2 3 20 20 H 1.08995 * 109.46984 * 57.32021 * 1 2 3 21 21 H 1.09000 * 109.46944 * 177.32517 * 1 2 3 22 22 H 1.09005 * 109.47221 * 59.99379 * 6 4 2 23 23 H 1.08997 * 109.47482 * 179.97438 * 6 4 2 24 24 H 1.09000 * 109.47192 * 299.99919 * 6 4 2 25 25 H 1.09003 * 110.36918 * 281.67920 * 8 7 4 26 26 H 1.09001 * 110.36813 * 159.34034 * 8 7 4 27 27 H 0.96693 * 114.00003 * 301.84720 * 10 9 8 28 28 H 0.97001 * 120.00297 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7812 -1.2178 5 1 3.0024 -0.3373 -1.5701 6 6 1.0334 -0.8016 -2.3417 7 8 2.3070 -2.1178 -0.7238 8 6 2.8757 -1.9422 0.5922 9 6 2.0714 -0.7813 1.2181 10 8 2.9218 0.0511 2.0093 11 6 0.9345 -1.3153 2.0507 12 1 0.5357 -2.2993 1.8525 13 6 0.4033 -0.5479 3.0654 14 7 -0.4961 -1.0610 3.8763 15 14 0.9611 1.2208 3.2887 16 1 2.1915 1.2508 4.1195 17 1 1.2458 1.8215 1.9607 18 1 -0.1106 1.9965 3.9632 19 1 -0.3633 0.4717 0.9131 20 1 -0.3633 0.5549 -0.8650 21 1 -0.3633 -1.0265 -0.0480 22 1 0.8080 0.2203 -2.6468 23 1 1.4301 -1.3554 -3.1926 24 1 0.1227 -1.2839 -1.9866 25 1 3.9302 -1.6762 0.5174 26 1 2.7534 -2.8503 1.1826 27 1 3.3751 -0.4163 2.7241 28 1 -0.8695 -0.5212 4.5905 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405668819.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:31 Heat of formation + Delta-G solvation = -121.595728 kcal Electronic energy + Delta-G solvation = -12510.484153 eV Core-core repulsion = 10332.536355 eV Total energy + Delta-G solvation = -2177.947798 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.97495 -37.33483 -34.78095 -34.07674 -31.50968 -28.29948 -27.09356 -25.81906 -22.13961 -20.66184 -19.41602 -17.68691 -17.04458 -16.39659 -16.13447 -15.73646 -15.07816 -14.83570 -14.05282 -13.94207 -13.34706 -13.20862 -12.99304 -12.79741 -12.54868 -12.09093 -11.93773 -11.64656 -11.35491 -11.00693 -10.77747 -10.52111 -10.27384 -8.32189 -6.40167 1.45285 1.48692 1.69102 2.43611 2.98670 3.00961 3.60550 3.95973 4.05617 4.20272 4.35413 4.54954 4.62286 4.72600 4.79696 4.83842 5.01694 5.06336 5.30491 5.34345 5.39637 5.49950 5.67277 6.04127 6.12269 6.62354 6.96114 7.33290 8.81267 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.049046 B = 0.018173 C = 0.017442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.760271 B = 1540.396325 C = 1604.909256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.073 3.927 5 H 0.078 0.922 6 C -0.142 4.142 7 O -0.389 6.389 8 C 0.034 3.966 9 C 0.188 3.812 10 O -0.565 6.565 11 C -0.529 4.529 12 H 0.037 0.963 13 C 0.031 3.969 14 N -0.939 5.939 15 Si 0.995 3.005 16 H -0.283 1.283 17 H -0.260 1.260 18 H -0.337 1.337 19 H 0.030 0.970 20 H 0.065 0.935 21 H 0.041 0.959 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.382 0.618 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 3.412 -8.702 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 H 0.093 0.907 4 C 0.016 3.984 5 H 0.096 0.904 6 C -0.198 4.198 7 O -0.309 6.309 8 C -0.043 4.043 9 C 0.148 3.852 10 O -0.374 6.374 11 C -0.566 4.566 12 H 0.056 0.944 13 C -0.169 4.169 14 N -0.577 5.577 15 Si 0.829 3.171 16 H -0.210 1.210 17 H -0.186 1.186 18 H -0.269 1.269 19 H 0.049 0.951 20 H 0.084 0.916 21 H 0.061 0.939 22 H 0.107 0.893 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.232 0.768 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.687 3.650 -9.108 11.341 hybrid contribution 0.072 0.179 1.249 1.263 sum 5.759 3.829 -7.859 10.469 Atomic orbital electron populations 1.21548 0.94100 1.00768 0.99679 1.22568 0.97175 0.99264 0.94392 0.90694 1.23143 0.98606 0.82488 0.94203 0.90387 1.21867 0.98109 1.03400 0.96474 1.89022 1.83537 1.27330 1.31012 1.24043 0.96603 0.99890 0.83772 1.20638 0.87916 0.87361 0.89308 1.86093 1.62390 1.40925 1.47977 1.21242 1.17500 1.02358 1.15532 0.94434 1.25728 0.94062 1.02592 0.94473 1.70088 1.30767 1.38695 1.18169 0.84958 0.74700 0.79219 0.78235 1.21014 1.18553 1.26897 0.95101 0.91610 0.93943 0.89262 0.91141 0.92547 0.90935 0.90122 0.76802 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.34 6.70 71.98 0.48 -3.85 15 2 C -0.11 -4.64 2.54 -9.78 -0.02 -4.66 15 3 H 0.07 2.96 7.52 -2.39 -0.02 2.94 15 4 C 0.07 2.50 3.83 31.10 0.12 2.62 15 5 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 6 C -0.14 -3.99 8.42 71.98 0.61 -3.38 15 7 O -0.39 -15.61 11.35 -148.98 -1.69 -17.30 15 8 C 0.03 1.35 6.90 72.49 0.50 1.85 15 9 C 0.19 8.35 0.91 -10.52 -0.01 8.34 15 10 O -0.56 -23.61 8.58 -148.98 -1.28 -24.89 15 11 C -0.53 -28.81 6.61 25.60 0.17 -28.64 15 12 H 0.04 2.33 8.06 -2.91 -0.02 2.30 15 13 C 0.03 1.73 4.79 84.65 0.41 2.13 15 14 N -0.94 -57.55 13.96 21.45 0.30 -57.25 15 15 Si 1.00 48.56 23.18 68.60 1.59 50.15 15 16 H -0.28 -13.18 7.11 99.48 0.71 -12.48 15 17 H -0.26 -12.22 5.98 99.48 0.59 -11.63 15 18 H -0.34 -16.95 7.11 99.48 0.71 -16.24 15 19 H 0.03 1.43 5.18 -2.39 -0.01 1.42 15 20 H 0.07 2.20 7.05 -2.39 -0.02 2.18 15 21 H 0.04 1.92 6.88 -2.39 -0.02 1.90 15 22 H 0.09 2.07 7.78 -2.38 -0.02 2.05 15 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.06 1.76 6.58 -2.39 -0.02 1.74 15 25 H 0.07 2.45 8.09 -2.39 -0.02 2.43 15 26 H 0.08 3.30 7.86 -2.39 -0.02 3.29 15 27 H 0.38 13.82 9.01 -74.06 -0.67 13.16 15 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 15 Total: -1.00 -64.68 216.57 1.54 -63.14 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.37 Total: 11.75 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 2.25 Total: -25.59 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -2.97 Total: -42.19 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.59 Total: 50.15 kcal Total: -64.68 1.54 -63.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405668819.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.459 kcal (2) G-P(sol) polarization free energy of solvation -64.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds