Wall clock time and date at job start Mon Mar 30 2020 01:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.82336 * 59.43431 * 9 7 2 11 11 O 1.20822 * 119.99826 * 95.70388 * 10 9 7 12 12 O 1.34235 * 119.99758 * 275.69538 * 10 9 7 13 13 C 1.54378 * 109.82979 * 180.41416 * 9 7 2 14 14 C 1.55312 * 102.25530 * 98.15719 * 13 9 7 15 15 C 1.54948 * 100.93764 * 34.13437 * 14 13 9 16 16 O 1.43242 * 109.83061 * 298.54629 * 9 7 2 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 0.96701 * 116.99159 * 179.97438 * 12 10 9 19 19 H 1.09006 * 110.85043 * 216.34279 * 13 9 7 20 20 H 1.08997 * 110.85227 * 339.96848 * 13 9 7 21 21 H 1.09001 * 111.12188 * 276.21657 * 14 13 9 22 22 H 1.09000 * 111.12381 * 152.04867 * 14 13 9 23 23 H 1.09005 * 110.30523 * 204.63819 * 15 14 13 24 24 H 1.08997 * 110.30841 * 82.47390 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3707 -2.5810 -1.2209 11 8 0.7606 -3.1556 -2.2096 12 8 -0.8467 -2.0155 -1.2094 13 6 2.2468 -3.6788 0.0093 14 6 2.2861 -4.0646 1.5133 15 6 0.8242 -3.7663 1.9315 16 8 0.4509 -2.5983 1.1834 17 1 -0.4850 0.8401 0.0004 18 1 -1.3747 -2.0939 -2.0157 19 1 1.8736 -4.5066 -0.5938 20 1 3.2304 -3.3592 -0.3349 21 1 2.9877 -3.4361 2.0618 22 1 2.5238 -5.1205 1.6419 23 1 0.7707 -3.5636 3.0012 24 1 0.1779 -4.6047 1.6718 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575455474.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:15 Heat of formation + Delta-G solvation = -133.787878 kcal Electronic energy + Delta-G solvation = -12085.755708 eV Core-core repulsion = 9771.446124 eV Total energy + Delta-G solvation = -2314.309584 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.23523 -37.38891 -34.59151 -32.76034 -30.97241 -29.00038 -24.75383 -22.91486 -20.96995 -19.35513 -17.17559 -16.61214 -15.60621 -14.79129 -14.74136 -14.03553 -13.81932 -12.75277 -12.35351 -11.95870 -11.54538 -10.99162 -10.85028 -10.61395 -10.53555 -10.44171 -10.02508 -9.94087 -9.70419 -9.31076 -8.63906 -8.07929 -6.08375 -4.33856 3.24558 3.31433 3.34600 3.72744 4.32082 4.61243 4.92941 5.31399 5.45883 5.67986 5.97570 6.23158 6.28267 6.46764 6.54524 6.75614 6.84423 7.03031 7.71629 7.86062 7.95302 8.31212 8.74343 9.35732 9.49733 10.88765 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.039004 B = 0.019728 C = 0.016611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.705857 B = 1418.957398 C = 1685.239167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.243 3.757 10 C 0.497 3.503 11 O -0.574 6.574 12 O -0.459 6.459 13 C -0.128 4.128 14 C -0.150 4.150 15 C 0.044 3.956 16 O -0.345 6.345 17 H 0.265 0.735 18 H 0.363 0.637 19 H 0.064 0.936 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -3.983 1.865 4.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.580 4.580 8 H 0.092 0.908 9 C 0.204 3.796 10 C 0.343 3.657 11 O -0.469 6.469 12 O -0.262 6.262 13 C -0.166 4.166 14 C -0.188 4.188 15 C -0.034 4.034 16 O -0.264 6.264 17 H 0.075 0.925 18 H 0.215 0.785 19 H 0.082 0.918 20 H 0.098 0.902 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.064 -3.827 2.050 4.470 hybrid contribution 0.236 0.751 -0.662 1.029 sum 1.300 -3.076 1.388 3.616 Atomic orbital electron populations 1.70142 1.05450 1.26769 1.42623 1.25231 0.95100 0.99710 0.93561 0.86518 0.79973 0.82734 0.78420 1.20142 1.19619 1.20954 1.21002 0.92896 0.88408 1.55661 0.90801 1.19339 0.84726 0.95606 0.79963 1.24764 0.79452 0.70605 0.90830 1.90507 1.74375 1.45029 1.37010 1.85159 1.27997 1.71523 1.41533 1.22983 1.00689 0.97401 0.95479 1.23180 0.98317 1.00459 0.96837 1.23201 0.93552 0.89965 0.96695 1.88847 1.60609 1.41373 1.35527 0.92537 0.78461 0.91767 0.90192 0.90536 0.91597 0.91278 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.17 10.33 55.43 0.57 -22.60 14 2 C 0.07 2.05 5.26 -17.82 -0.09 1.96 14 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 14 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.27 -6.24 7.11 56.52 0.40 -5.84 14 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 7 C -0.54 -15.01 8.22 -34.44 -0.28 -15.29 14 8 H 0.07 1.97 7.48 -52.49 -0.39 1.58 14 9 C 0.24 6.31 0.78 -92.20 -0.07 6.24 14 10 C 0.50 13.23 6.72 36.01 0.24 13.47 14 11 O -0.57 -15.57 16.67 -18.75 -0.31 -15.88 14 12 O -0.46 -11.51 10.92 -44.17 -0.48 -11.99 14 13 C -0.13 -2.78 5.73 -24.78 -0.14 -2.92 14 14 C -0.15 -2.75 7.16 -24.48 -0.18 -2.92 14 15 C 0.04 0.87 7.78 38.19 0.30 1.17 14 16 O -0.34 -8.96 9.99 -47.97 -0.48 -9.43 14 17 H 0.26 7.10 8.31 -40.82 -0.34 6.76 14 18 H 0.36 7.17 9.10 45.56 0.41 7.58 14 19 H 0.06 1.36 7.35 -51.93 -0.38 0.98 14 20 H 0.08 1.69 7.60 -51.93 -0.39 1.30 14 21 H 0.08 1.37 8.14 -51.93 -0.42 0.95 14 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 14 23 H 0.07 1.24 8.14 -51.93 -0.42 0.82 14 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 14 LS Contribution 212.81 15.07 3.21 3.21 Total: -1.00 -31.90 212.81 -4.32 -36.22 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -1.58 Total: 2.91 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.23 Total: 1.70 kcal Atomic # 7 Polarization: -23.17 SS G_CDS: 0.57 Total: -22.60 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.27 Total: -37.31 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -31.90 -4.32 -36.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575455474.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.566 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds