Wall clock time and date at job start Mon Mar 30 2020 01:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.82336 * 59.43431 * 9 7 2 11 11 O 1.20822 * 119.99826 * 95.70388 * 10 9 7 12 12 O 1.34235 * 119.99758 * 275.69538 * 10 9 7 13 13 C 1.54378 * 109.82979 * 180.41416 * 9 7 2 14 14 C 1.55312 * 102.25530 * 98.15719 * 13 9 7 15 15 C 1.54948 * 100.93764 * 34.13437 * 14 13 9 16 16 O 1.43242 * 109.83061 * 298.54629 * 9 7 2 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 0.96701 * 116.99159 * 179.97438 * 12 10 9 19 19 H 1.09006 * 110.85043 * 216.34279 * 13 9 7 20 20 H 1.08997 * 110.85227 * 339.96848 * 13 9 7 21 21 H 1.09001 * 111.12188 * 276.21657 * 14 13 9 22 22 H 1.09000 * 111.12381 * 152.04867 * 14 13 9 23 23 H 1.09005 * 110.30523 * 204.63819 * 15 14 13 24 24 H 1.08997 * 110.30841 * 82.47390 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3707 -2.5810 -1.2209 11 8 0.7606 -3.1556 -2.2096 12 8 -0.8467 -2.0155 -1.2094 13 6 2.2468 -3.6788 0.0093 14 6 2.2861 -4.0646 1.5133 15 6 0.8242 -3.7663 1.9315 16 8 0.4509 -2.5983 1.1834 17 1 -0.4850 0.8401 0.0004 18 1 -1.3747 -2.0939 -2.0157 19 1 1.8736 -4.5066 -0.5938 20 1 3.2304 -3.3592 -0.3349 21 1 2.9877 -3.4361 2.0618 22 1 2.5238 -5.1205 1.6419 23 1 0.7707 -3.5636 3.0012 24 1 0.1779 -4.6047 1.6718 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575455474.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:15 Heat of formation + Delta-G solvation = -156.609568 kcal Electronic energy + Delta-G solvation = -12086.745331 eV Core-core repulsion = 9771.446124 eV Total energy + Delta-G solvation = -2315.299207 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.16825 -39.24788 -36.61174 -34.77515 -32.69402 -30.82858 -26.70179 -24.80153 -22.56762 -21.28047 -19.15860 -18.60990 -17.46647 -16.76221 -16.50866 -15.86429 -15.67886 -14.52517 -14.16774 -13.83831 -13.33978 -12.82492 -12.64838 -12.37820 -12.30443 -12.17786 -11.98623 -11.75335 -11.45554 -11.20785 -10.66747 -9.96749 -8.11775 -6.44144 1.41253 1.43236 1.53654 1.69637 2.39080 2.76052 3.07059 3.44695 3.87101 4.19419 4.39556 4.64179 4.65439 4.93293 5.01378 5.09078 5.19638 5.34852 5.64084 5.91075 5.97217 6.41799 6.79660 7.29251 7.56254 8.84946 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.039004 B = 0.019728 C = 0.016611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.705857 B = 1418.957398 C = 1685.239167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.281 1.281 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.228 3.772 10 C 0.490 3.510 11 O -0.589 6.589 12 O -0.468 6.468 13 C -0.128 4.128 14 C -0.135 4.135 15 C 0.031 3.969 16 O -0.380 6.380 17 H 0.265 0.735 18 H 0.383 0.617 19 H 0.064 0.936 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.107 0.893 23 H 0.089 0.911 24 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -4.230 2.492 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.206 1.206 7 C -0.603 4.603 8 H 0.092 0.908 9 C 0.188 3.812 10 C 0.337 3.663 11 O -0.485 6.485 12 O -0.273 6.273 13 C -0.166 4.166 14 C -0.172 4.172 15 C -0.046 4.046 16 O -0.299 6.299 17 H 0.074 0.926 18 H 0.238 0.762 19 H 0.083 0.917 20 H 0.098 0.902 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.107 0.893 24 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.804 -4.085 2.680 5.208 hybrid contribution -0.056 0.773 -0.858 1.156 sum 1.748 -3.312 1.821 4.164 Atomic orbital electron populations 1.70271 1.06685 1.27436 1.43484 1.26012 0.95991 1.02959 0.93187 0.85517 0.78717 0.78589 0.78609 1.19455 1.19171 1.20644 1.21345 0.93194 0.89735 1.55984 0.90819 1.19540 0.85303 0.96576 0.79757 1.25085 0.79791 0.70325 0.91049 1.90478 1.74766 1.45746 1.37558 1.85107 1.27969 1.71126 1.43067 1.22976 0.99482 0.95984 0.98140 1.23152 0.97137 1.03019 0.93886 1.23540 0.95005 0.88804 0.97221 1.88755 1.61201 1.44060 1.35927 0.92613 0.76189 0.91692 0.90239 0.90295 0.87488 0.89308 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.99 10.33 21.45 0.22 -47.77 14 2 C 0.03 1.43 5.26 84.66 0.45 1.88 14 3 Si 0.96 42.61 29.54 68.60 2.03 44.63 14 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 14 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 14 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 14 7 C -0.57 -31.12 8.22 25.60 0.21 -30.91 14 8 H 0.07 3.91 7.48 -2.91 -0.02 3.89 14 9 C 0.23 11.72 0.78 -11.82 -0.01 11.71 14 10 C 0.49 26.06 6.72 71.24 0.48 26.54 14 11 O -0.59 -31.85 16.67 21.98 0.37 -31.49 14 12 O -0.47 -23.48 10.92 -46.78 -0.51 -23.99 14 13 C -0.13 -5.39 5.73 31.86 0.18 -5.20 14 14 C -0.13 -4.53 7.16 32.05 0.23 -4.30 14 15 C 0.03 1.17 7.78 72.65 0.56 1.74 14 16 O -0.38 -19.50 9.99 -136.80 -1.37 -20.86 14 17 H 0.26 14.23 8.31 -92.71 -0.77 13.46 14 18 H 0.38 15.07 9.10 -74.06 -0.67 14.40 14 19 H 0.06 2.67 7.35 -2.38 -0.02 2.65 14 20 H 0.08 3.28 7.60 -2.39 -0.02 3.26 14 21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 14 22 H 0.11 2.73 8.14 -2.39 -0.02 2.71 14 23 H 0.09 2.96 8.14 -2.38 -0.02 2.94 14 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 14 Total: -1.00 -66.82 212.81 3.38 -63.44 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.54 Total: 14.58 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 2.10 Total: 1.46 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.22 Total: -47.77 kcal Atomic # 8 Polarization: -74.83 SS G_CDS: -1.51 Total: -76.34 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -66.82 3.38 -63.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575455474.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.166 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds