Wall clock time and date at job start Mon Mar 30 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99301 * 2 1 4 4 H 1.08996 * 110.05924 * 28.58309 * 3 2 1 5 5 C 1.54378 * 110.06847 * 267.12023 * 3 2 1 6 6 C 1.54892 * 104.21255 * 217.15373 * 5 3 2 7 7 C 1.54883 * 102.74944 * 37.92894 * 6 5 3 8 8 C 1.53876 * 110.03034 * 150.00020 * 3 2 1 9 9 O 1.42897 * 110.03205 * 359.94833 * 8 3 2 10 10 C 1.50703 * 110.03343 * 238.56890 * 8 3 2 11 11 H 1.07999 * 119.99815 * 356.06010 * 10 8 3 12 12 C 1.37873 * 120.00163 * 176.06672 * 10 8 3 13 13 N 1.31513 * 120.00035 * 7.46078 * 12 10 8 14 14 Si 1.86796 * 120.00205 * 187.46143 * 12 10 8 15 15 H 1.48496 * 109.47602 * 179.97438 * 14 12 10 16 16 H 1.48504 * 109.47179 * 59.99762 * 14 12 10 17 17 H 1.48500 * 109.47110 * 300.00134 * 14 12 10 18 18 H 1.09008 * 109.46830 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47734 * 299.99836 * 1 2 3 20 20 H 1.08999 * 109.47066 * 60.00476 * 1 2 3 21 21 H 1.08999 * 110.48994 * 98.46417 * 5 3 2 22 22 H 1.08991 * 110.57265 * 335.88958 * 5 3 2 23 23 H 1.09000 * 110.75540 * 279.61004 * 6 5 3 24 24 H 1.08998 * 110.75095 * 156.24158 * 6 5 3 25 25 H 1.08997 * 110.48560 * 203.37389 * 7 6 5 26 26 H 1.09000 * 110.48872 * 80.73329 * 7 6 5 27 27 H 0.96703 * 114.00374 * 172.59772 * 9 8 3 28 28 H 0.96998 * 119.99857 * 5.43643 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3407 2.0127 0.4898 5 6 2.2921 1.7599 -1.4482 6 6 3.6272 2.5388 -1.3493 7 6 4.4274 1.7150 -0.3101 8 6 3.3682 1.2779 0.7228 9 8 3.6506 -0.0448 1.1837 10 6 3.3540 2.2371 1.8852 11 1 2.4905 2.8620 2.0590 12 6 4.4434 2.3170 2.7264 13 7 5.5492 1.6680 2.4338 14 14 4.3488 3.3470 4.2819 15 1 5.6418 3.2674 5.0078 16 1 3.2610 2.8316 5.1515 17 1 4.0681 4.7604 3.9232 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.4953 2.4123 -1.8054 22 1 2.4013 0.8975 -2.1057 23 1 3.4566 3.5535 -0.9894 24 1 4.1400 2.5500 -2.3110 25 1 5.1889 2.3347 0.1633 26 1 4.8821 0.8441 -0.7821 27 1 4.5402 -0.1533 1.5471 28 1 5.6264 1.1977 1.5890 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245023.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:32 Heat of formation + Delta-G solvation = -125.417849 kcal Electronic energy + Delta-G solvation = -12282.642684 eV Core-core repulsion = 10104.529147 eV Total energy + Delta-G solvation = -2178.113538 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.36700 -37.73889 -35.42171 -34.13838 -29.36728 -28.82421 -27.27985 -25.56356 -21.73201 -21.07072 -19.97599 -17.75944 -16.76347 -16.24925 -15.79087 -15.61128 -15.27908 -15.05979 -14.39017 -13.94512 -13.24506 -13.03454 -12.65218 -12.44682 -12.22458 -12.00222 -11.93883 -11.84684 -11.64301 -11.15224 -10.63701 -10.30699 -9.98238 -8.60734 -6.44318 1.52251 1.58548 1.79051 2.52590 2.93988 3.09697 3.74136 3.83036 3.89577 4.26417 4.33668 4.49628 4.54638 4.65345 4.75285 4.78974 4.88050 5.03250 5.09958 5.17778 5.34437 5.42238 5.95124 6.07508 6.40961 6.52461 7.15351 7.35212 8.69049 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.044192 B = 0.015460 C = 0.013915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.449126 B = 1810.746851 C = 2011.702957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.101 3.899 4 H 0.055 0.945 5 C -0.135 4.135 6 C -0.105 4.105 7 C -0.147 4.147 8 C 0.214 3.786 9 O -0.584 6.584 10 C -0.630 4.630 11 H 0.046 0.954 12 C -0.014 4.014 13 N -0.928 5.928 14 Si 1.111 2.889 15 H -0.281 1.281 16 H -0.279 1.279 17 H -0.268 1.268 18 H 0.096 0.904 19 H 0.033 0.967 20 H 0.055 0.945 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.357 0.643 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.248 1.873 -5.578 8.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.043 3.957 4 H 0.073 0.927 5 C -0.172 4.172 6 C -0.143 4.143 7 C -0.186 4.186 8 C 0.174 3.826 9 O -0.390 6.390 10 C -0.667 4.667 11 H 0.065 0.935 12 C -0.213 4.213 13 N -0.569 5.569 14 Si 0.933 3.067 15 H -0.206 1.206 16 H -0.205 1.205 17 H -0.193 1.193 18 H 0.115 0.885 19 H 0.052 0.948 20 H 0.073 0.927 21 H 0.106 0.894 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.204 0.796 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.939 2.013 -4.458 7.694 hybrid contribution -0.312 -0.254 -0.998 1.076 sum -6.251 1.759 -5.456 8.481 Atomic orbital electron populations 1.22945 0.80894 1.03378 1.00110 1.88012 1.20296 1.27968 1.95006 1.23004 0.93435 0.83869 0.95355 0.92734 1.22842 0.98449 1.00329 0.95600 1.22224 0.95272 0.98316 0.98451 1.23069 0.98953 0.99040 0.97496 1.19966 0.90857 0.80521 0.91206 1.86415 1.36502 1.32894 1.83159 1.22782 1.04224 1.24533 1.15209 0.93531 1.27139 0.91598 0.97439 1.05137 1.70981 1.27997 1.32905 1.25005 0.83011 0.76260 0.75126 0.72277 1.20597 1.20479 1.19289 0.88531 0.94831 0.92679 0.89441 0.90744 0.91568 0.89612 0.93148 0.93597 0.79631 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 10.85 113.37 1.23 1.97 15 2 O -0.39 -17.52 9.42 -128.27 -1.21 -18.73 15 3 C 0.10 4.54 3.04 31.36 0.10 4.63 15 4 H 0.05 2.45 7.04 -2.39 -0.02 2.43 15 5 C -0.13 -4.81 6.56 31.71 0.21 -4.61 15 6 C -0.11 -3.90 6.91 31.88 0.22 -3.68 15 7 C -0.15 -6.90 4.89 31.67 0.15 -6.74 15 8 C 0.21 11.16 0.96 -10.81 -0.01 11.14 15 9 O -0.58 -33.02 11.99 -128.27 -1.54 -34.55 15 10 C -0.63 -35.46 8.16 25.60 0.21 -35.25 15 11 H 0.05 2.60 7.34 -2.91 -0.02 2.58 15 12 C -0.01 -0.77 5.09 84.65 0.43 -0.34 15 13 N -0.93 -54.03 12.47 21.45 0.27 -53.76 15 14 Si 1.11 49.52 29.91 68.60 2.05 51.57 15 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 16 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 18 H 0.10 2.65 8.14 -2.38 -0.02 2.63 15 19 H 0.03 1.08 8.10 -2.39 -0.02 1.06 15 20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 22 H 0.07 2.58 8.08 -2.39 -0.02 2.56 15 23 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.05 2.58 6.34 -2.39 -0.02 2.56 15 26 H 0.05 2.10 8.08 -2.39 -0.02 2.08 15 27 H 0.36 20.11 6.48 -74.06 -0.48 19.63 15 28 H 0.27 15.28 4.27 -92.71 -0.40 14.88 15 Total: -1.00 -65.32 227.99 3.15 -62.17 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 1.04 Total: 26.17 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 2.54 Total: -32.87 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.27 Total: -53.76 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -2.75 Total: -53.28 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Total: -65.32 3.15 -62.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245023.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.249 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds