Wall clock time and date at job start Mon Mar 30 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99775 * 2 1 4 4 H 1.09002 * 110.01889 * 331.39201 * 3 2 1 5 5 C 1.54264 * 110.07408 * 92.80828 * 3 2 1 6 6 C 1.54893 * 104.19588 * 142.91673 * 5 3 2 7 7 C 1.54890 * 102.74790 * 322.05802 * 6 5 3 8 8 C 1.53880 * 110.02971 * 210.00025 * 3 2 1 9 9 O 1.42902 * 110.03069 * 121.38363 * 8 3 2 10 10 C 1.50692 * 110.03410 * 0.02562 * 8 3 2 11 11 H 1.08002 * 119.99996 * 0.72519 * 10 8 3 12 12 C 1.37878 * 120.00211 * 180.72873 * 10 8 3 13 13 N 1.31512 * 119.99719 * 5.74379 * 12 10 8 14 14 Si 1.86795 * 120.00182 * 185.74512 * 12 10 8 15 15 H 1.48500 * 109.47029 * 84.98856 * 14 12 10 16 16 H 1.48500 * 109.47412 * 204.98489 * 14 12 10 17 17 H 1.48499 * 109.47126 * 324.98958 * 14 12 10 18 18 H 1.09005 * 109.47283 * 59.99903 * 1 2 3 19 19 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46877 * 300.00398 * 1 2 3 21 21 H 1.08994 * 110.48887 * 261.59085 * 5 3 2 22 22 H 1.09002 * 110.48592 * 24.11066 * 5 3 2 23 23 H 1.08998 * 110.76075 * 80.37140 * 6 5 3 24 24 H 1.09002 * 110.75902 * 203.74489 * 6 5 3 25 25 H 1.09003 * 110.48633 * 279.26407 * 7 6 5 26 26 H 1.09004 * 110.49006 * 156.61942 * 7 6 5 27 27 H 0.96702 * 113.99946 * 173.80040 * 9 8 3 28 28 H 0.97006 * 120.00211 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3405 2.0121 -0.4904 5 6 2.2904 1.7603 1.4472 6 6 3.6248 2.5406 1.3485 7 6 4.4264 1.7168 0.3103 8 6 3.3684 1.2778 -0.7229 9 8 3.3545 2.1865 -1.8257 10 6 3.6664 -0.1173 -1.2084 11 1 2.9566 -0.9126 -1.0348 12 6 4.8452 -0.3785 -1.8741 13 7 5.7588 0.5608 -1.9866 14 14 5.1446 -2.0664 -2.6161 15 1 4.5331 -2.1283 -3.9680 16 1 6.6059 -2.3083 -2.7224 17 1 4.5328 -3.1043 -1.7481 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.4928 2.4122 1.8034 22 1 2.3986 0.8973 2.1041 23 1 3.4535 3.5548 0.9877 24 1 4.1371 2.5531 2.3105 25 1 4.8818 0.8467 0.7833 26 1 5.1877 2.3369 -0.1632 27 1 4.2106 2.2858 -2.2643 28 1 6.5884 0.3770 -2.4546 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245027.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:34 Heat of formation + Delta-G solvation = -124.743993 kcal Electronic energy + Delta-G solvation = -12268.653344 eV Core-core repulsion = 10090.569027 eV Total energy + Delta-G solvation = -2178.084317 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.11519 -37.45006 -35.04609 -34.09062 -29.45835 -28.85029 -26.86755 -25.71156 -21.65252 -20.88722 -19.04583 -17.13609 -16.91410 -16.74492 -15.87250 -15.75840 -15.26804 -14.59328 -13.84838 -13.54738 -13.13736 -13.06841 -12.84025 -12.59147 -12.26207 -12.18007 -11.80153 -11.68200 -11.35746 -10.96803 -10.59414 -10.20620 -9.96858 -8.12144 -6.21034 1.40783 1.42118 1.52050 2.44849 2.96300 3.20158 3.87571 3.99082 4.26716 4.44796 4.47916 4.59706 4.64884 4.84297 4.91436 4.92153 5.04057 5.15876 5.22812 5.41236 5.62636 5.71912 5.91884 6.24125 6.65150 6.90098 7.41113 7.50068 8.93593 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.039017 B = 0.017751 C = 0.014084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.471830 B = 1576.980055 C = 1987.536959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.388 6.388 3 C 0.097 3.903 4 H 0.052 0.948 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.109 4.109 8 C 0.224 3.776 9 O -0.600 6.600 10 C -0.538 4.538 11 H 0.064 0.936 12 C 0.021 3.979 13 N -0.919 5.919 14 Si 0.954 3.046 15 H -0.279 1.279 16 H -0.281 1.281 17 H -0.274 1.274 18 H 0.034 0.966 19 H 0.093 0.907 20 H 0.053 0.947 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.375 0.625 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 1.603 5.121 7.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C 0.039 3.961 4 H 0.070 0.930 5 C -0.168 4.168 6 C -0.157 4.157 7 C -0.147 4.147 8 C 0.185 3.815 9 O -0.409 6.409 10 C -0.576 4.576 11 H 0.082 0.918 12 C -0.178 4.178 13 N -0.560 5.560 14 Si 0.781 3.219 15 H -0.205 1.205 16 H -0.207 1.207 17 H -0.199 1.199 18 H 0.053 0.947 19 H 0.112 0.888 20 H 0.072 0.928 21 H 0.104 0.896 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.224 0.776 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.176 1.511 5.227 8.231 hybrid contribution 0.827 -0.746 -0.861 1.408 sum -5.349 0.765 4.365 6.946 Atomic orbital electron populations 1.22931 0.81301 1.03177 1.00063 1.88076 1.19804 1.27886 1.94895 1.22579 0.94543 0.83506 0.95437 0.93006 1.22748 0.98311 1.00156 0.95541 1.22482 0.95672 0.98374 0.99192 1.22592 0.97646 0.97768 0.96699 1.19578 0.90481 0.87563 0.83893 1.86073 1.38300 1.67010 1.49494 1.21959 1.03387 0.96450 1.35847 0.91750 1.25686 0.95415 1.00443 0.96235 1.69863 1.07881 1.34737 1.43558 0.85641 0.76867 0.80721 0.78715 1.20538 1.20674 1.19945 0.94721 0.88843 0.92815 0.89551 0.91077 0.91429 0.90322 0.94271 0.93558 0.77641 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 10.85 113.37 1.23 1.92 15 2 O -0.39 -17.16 7.99 -148.98 -1.19 -18.35 15 3 C 0.10 4.30 3.17 31.32 0.10 4.40 15 4 H 0.05 2.25 7.62 -2.39 -0.02 2.23 15 5 C -0.13 -4.66 6.56 31.67 0.21 -4.45 15 6 C -0.12 -4.42 6.91 31.89 0.22 -4.20 15 7 C -0.11 -5.19 5.00 31.67 0.16 -5.04 15 8 C 0.22 11.63 0.97 -10.82 -0.01 11.62 15 9 O -0.60 -32.45 12.88 -148.98 -1.92 -34.37 15 10 C -0.54 -30.85 7.79 25.60 0.20 -30.65 15 11 H 0.06 3.81 6.12 -2.91 -0.02 3.79 15 12 C 0.02 1.16 5.26 84.66 0.45 1.61 15 13 N -0.92 -51.56 10.79 21.45 0.23 -51.32 15 14 Si 0.95 45.01 29.54 68.60 2.03 47.04 15 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 17 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 18 H 0.03 1.09 8.10 -2.38 -0.02 1.07 15 19 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 20 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.07 2.54 8.08 -2.39 -0.02 2.53 15 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.04 2.00 7.85 -2.39 -0.02 1.98 15 26 H 0.05 2.32 7.70 -2.38 -0.02 2.30 15 27 H 0.37 20.53 7.37 -74.06 -0.55 19.99 15 28 H 0.26 14.14 8.31 -92.70 -0.77 13.37 15 Total: -1.00 -62.12 230.88 2.29 -59.83 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.60 Total: 21.96 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 2.55 Total: -24.79 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.23 Total: -51.32 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -3.11 Total: -52.71 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -62.12 2.29 -59.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245027.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.915 kcal (2) G-P(sol) polarization free energy of solvation -62.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds