Wall clock time and date at job start Mon Mar 30 2020 02:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42893 * 113.99977 * 2 1 4 4 H 1.08999 * 110.05760 * 29.96093 * 3 2 1 5 5 C 1.54268 * 110.03072 * 268.54526 * 3 2 1 6 6 C 1.54889 * 104.19728 * 217.10646 * 5 3 2 7 7 C 1.54897 * 102.74591 * 37.94393 * 6 5 3 8 8 C 1.53873 * 110.03017 * 151.38304 * 3 2 1 9 9 O 1.42903 * 110.03204 * 238.56675 * 8 3 2 10 10 C 1.50697 * 110.03567 * 359.97438 * 8 3 2 11 11 H 1.08003 * 119.99440 * 358.62696 * 10 8 3 12 12 C 1.37876 * 120.00592 * 178.62015 * 10 8 3 13 13 N 1.31519 * 119.99531 * 0.02562 * 12 10 8 14 14 Si 1.86793 * 120.00491 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47012 * 90.00069 * 14 12 10 16 16 H 1.48500 * 109.47294 * 210.00164 * 14 12 10 17 17 H 1.48500 * 109.46980 * 330.00309 * 14 12 10 18 18 H 1.08998 * 109.46855 * 300.00139 * 1 2 3 19 19 H 1.09000 * 109.46525 * 59.99668 * 1 2 3 20 20 H 1.08990 * 109.47120 * 180.02562 * 1 2 3 21 21 H 1.08998 * 110.48695 * 98.42904 * 5 3 2 22 22 H 1.08999 * 110.48827 * 335.78463 * 5 3 2 23 23 H 1.09000 * 110.75622 * 279.63120 * 6 5 3 24 24 H 1.09002 * 110.76161 * 156.25634 * 6 5 3 25 25 H 1.08998 * 110.48266 * 80.73866 * 7 6 5 26 26 H 1.09000 * 110.48216 * 203.37721 * 7 6 5 27 27 H 0.96692 * 114.00434 * 181.37914 * 9 8 3 28 28 H 0.97003 * 119.99738 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3520 2.0077 0.5113 5 6 2.2588 1.7732 -1.4489 6 6 3.5954 2.5521 -1.3726 7 6 4.4194 1.7186 -0.3598 8 6 3.3840 1.2707 0.6924 9 8 3.3950 2.1694 1.8034 10 6 3.6925 -0.1291 1.1575 11 1 2.9745 -0.9206 1.0012 12 6 4.8914 -0.3995 1.7825 13 7 5.7656 0.5645 1.9731 14 14 5.2741 -2.1347 2.3584 15 1 5.9585 -2.8778 1.2700 16 1 6.1580 -2.0771 3.5502 17 1 4.0100 -2.8288 2.7126 18 1 -0.3633 0.5139 0.8900 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.4539 2.4285 -1.7816 22 1 2.3543 0.9160 -2.1154 23 1 3.4326 3.5630 -0.9990 24 1 4.0865 2.5730 -2.3455 25 1 4.8637 0.8527 -0.8505 26 1 5.1911 2.3342 0.1023 27 1 4.2415 2.2087 2.2692 28 1 6.6092 0.3742 2.4124 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245031.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:35 Heat of formation + Delta-G solvation = -125.089586 kcal Electronic energy + Delta-G solvation = -12269.468593 eV Core-core repulsion = 10091.369290 eV Total energy + Delta-G solvation = -2178.099303 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.11524 -37.44543 -35.05708 -34.07033 -29.46725 -28.85753 -26.86945 -25.71239 -21.64992 -20.88407 -19.07097 -17.14576 -16.91761 -16.72710 -15.85733 -15.75390 -15.27331 -14.60350 -13.83125 -13.55570 -13.15010 -13.04276 -12.85658 -12.58231 -12.27198 -12.18350 -11.81204 -11.69886 -11.36348 -10.96974 -10.57892 -10.19954 -9.98836 -8.13136 -6.22695 1.40532 1.41850 1.52887 2.44449 2.96488 3.19413 3.87690 3.98715 4.26438 4.45304 4.47939 4.59590 4.64988 4.84224 4.90734 4.91854 5.03767 5.15354 5.22339 5.42229 5.62193 5.69906 5.91673 6.22664 6.64275 6.89231 7.43160 7.50600 8.93013 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.038925 B = 0.017692 C = 0.014150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.152172 B = 1582.226417 C = 1978.296286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.097 3.903 4 H 0.051 0.949 5 C -0.130 4.130 6 C -0.119 4.119 7 C -0.111 4.111 8 C 0.224 3.776 9 O -0.603 6.603 10 C -0.538 4.538 11 H 0.065 0.935 12 C 0.020 3.980 13 N -0.922 5.922 14 Si 0.956 3.044 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.276 1.276 18 H 0.034 0.966 19 H 0.054 0.946 20 H 0.093 0.907 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.377 0.623 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 1.402 -5.220 7.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.306 6.306 3 C 0.039 3.961 4 H 0.069 0.931 5 C -0.168 4.168 6 C -0.156 4.156 7 C -0.149 4.149 8 C 0.185 3.815 9 O -0.412 6.412 10 C -0.576 4.576 11 H 0.083 0.917 12 C -0.179 4.179 13 N -0.563 5.563 14 Si 0.783 3.217 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.201 1.201 18 H 0.053 0.947 19 H 0.072 0.928 20 H 0.112 0.888 21 H 0.105 0.895 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.227 0.773 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.159 1.356 -5.333 8.259 hybrid contribution 0.870 -0.788 0.780 1.409 sum -5.290 0.568 -4.553 7.002 Atomic orbital electron populations 1.22930 0.81306 1.03179 1.00075 1.88078 1.19796 1.27863 1.94906 1.22571 0.94497 0.83490 0.95500 0.93085 1.22757 0.98323 1.00139 0.95577 1.22471 0.95579 0.98318 0.99276 1.22595 0.97724 0.97759 0.96827 1.19574 0.90372 0.87684 0.83861 1.86040 1.40650 1.66739 1.47754 1.21983 1.01997 0.96282 1.37351 0.91686 1.25707 0.95769 1.00767 0.95625 1.69781 1.08982 1.33276 1.44288 0.85592 0.77694 0.80671 0.77787 1.20234 1.20677 1.20129 0.94733 0.92788 0.88840 0.89540 0.90997 0.91491 0.90268 0.94212 0.93678 0.77308 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 10.85 113.37 1.23 1.92 15 2 O -0.39 -17.14 7.99 -148.98 -1.19 -18.33 15 3 C 0.10 4.31 3.16 31.32 0.10 4.41 15 4 H 0.05 2.22 7.63 -2.39 -0.02 2.21 15 5 C -0.13 -4.67 6.55 31.67 0.21 -4.47 15 6 C -0.12 -4.40 6.91 31.89 0.22 -4.18 15 7 C -0.11 -5.30 5.09 31.67 0.16 -5.14 15 8 C 0.22 11.68 0.98 -10.82 -0.01 11.67 15 9 O -0.60 -32.89 12.88 -148.98 -1.92 -34.81 15 10 C -0.54 -30.80 7.79 25.60 0.20 -30.60 15 11 H 0.07 3.84 6.12 -2.91 -0.02 3.82 15 12 C 0.02 1.09 5.24 84.65 0.44 1.54 15 13 N -0.92 -51.68 10.72 21.45 0.23 -51.45 15 14 Si 0.96 44.90 29.54 68.60 2.03 46.92 15 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 17 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 18 H 0.03 1.08 8.10 -2.39 -0.02 1.06 15 19 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 21 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.07 2.56 8.08 -2.39 -0.02 2.54 15 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.04 2.02 7.85 -2.39 -0.02 2.00 15 26 H 0.04 2.27 7.83 -2.39 -0.02 2.25 15 27 H 0.38 21.03 7.19 -74.06 -0.53 20.50 15 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 Total: -1.00 -62.06 230.85 2.31 -59.76 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.61 Total: 22.76 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 2.55 Total: -24.85 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.23 Total: -51.45 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -3.11 Total: -53.14 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.06 2.31 -59.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245031.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.334 kcal (2) G-P(sol) polarization free energy of solvation -62.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds