Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00034 * 2 1 4 4 H 1.09002 * 110.01681 * 330.69932 * 3 2 1 5 5 C 1.54266 * 110.07332 * 92.11745 * 3 2 1 6 6 C 1.54894 * 104.19690 * 95.69791 * 5 3 2 7 7 C 1.54884 * 102.74702 * 37.94277 * 6 5 3 8 8 C 1.53873 * 110.03411 * 209.30898 * 3 2 1 9 9 O 1.42907 * 110.03190 * 359.95135 * 8 3 2 10 10 C 1.50699 * 110.03328 * 121.33180 * 8 3 2 11 11 H 1.08000 * 120.00039 * 0.02562 * 10 8 3 12 12 C 1.37877 * 120.00054 * 180.02562 * 10 8 3 13 13 N 1.31514 * 120.00102 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00083 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46961 * 89.99701 * 14 12 10 16 16 H 1.48497 * 109.47181 * 209.99714 * 14 12 10 17 17 H 1.48497 * 109.46826 * 329.99925 * 14 12 10 18 18 H 1.08999 * 109.47296 * 300.00134 * 1 2 3 19 19 H 1.09004 * 109.46772 * 60.00593 * 1 2 3 20 20 H 1.09000 * 109.46667 * 179.97438 * 1 2 3 21 21 H 1.08998 * 110.48638 * 214.37928 * 5 3 2 22 22 H 1.09001 * 110.48707 * 337.02015 * 5 3 2 23 23 H 1.09004 * 110.75571 * 279.62799 * 6 5 3 24 24 H 1.08991 * 110.91507 * 156.33313 * 6 5 3 25 25 H 1.09002 * 110.48690 * 203.38282 * 7 6 5 26 26 H 1.09000 * 110.59769 * 80.78992 * 7 6 5 27 27 H 0.96696 * 114.00125 * 180.02562 * 9 8 3 28 28 H 0.96996 * 120.00184 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 2.0096 -0.5012 5 6 2.2745 1.7674 1.4480 6 6 3.7589 1.4025 1.6982 7 6 4.4229 1.7183 0.3350 8 6 3.3762 1.2743 -0.7077 9 8 3.6647 -0.0513 -1.1569 10 6 3.3741 2.2260 -1.8762 11 1 2.4892 2.8028 -2.1012 12 6 4.5019 2.3602 -2.6579 13 7 5.5796 1.6582 -2.3836 14 14 4.4995 3.5404 -4.1059 15 1 4.9559 4.8793 -3.6540 16 1 5.4164 3.0342 -5.1586 17 1 3.1243 3.6459 -4.6562 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 2.1257 2.8434 1.5383 22 1 1.6277 1.2322 2.1432 23 1 3.8610 0.3449 1.9418 24 1 4.1841 2.0219 2.4877 25 1 5.3440 1.1473 0.2179 26 1 4.6228 2.7860 0.2441 27 1 4.5139 -0.1365 -1.6114 28 1 6.3728 1.7524 -2.9338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245034.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -106.636018 kcal Electronic energy + Delta-G solvation = -12235.996361 eV Core-core repulsion = 10058.697265 eV Total energy + Delta-G solvation = -2177.299097 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.32265 -35.57555 -33.16995 -31.97813 -27.63429 -27.09857 -25.67425 -23.67151 -19.85154 -18.97916 -17.13306 -15.56994 -14.92515 -14.81936 -14.34822 -13.77609 -13.47536 -12.98576 -12.12538 -11.76956 -11.43232 -11.19016 -10.87099 -10.70610 -10.46242 -10.33891 -10.08263 -9.95367 -9.83213 -9.17853 -8.67692 -8.40906 -7.90306 -6.15584 -4.23779 3.24265 3.31492 3.35158 4.31906 4.69364 5.12003 5.60049 5.64044 5.78204 5.87797 5.94513 6.12431 6.18207 6.43563 6.48176 6.63243 6.67906 6.78544 7.03315 7.24462 7.55568 7.63327 7.86854 8.11099 8.24249 8.77333 9.44271 9.73828 10.90963 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046485 B = 0.015054 C = 0.013524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.196758 B = 1859.572926 C = 2069.935847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.099 3.901 4 H 0.057 0.943 5 C -0.145 4.145 6 C -0.124 4.124 7 C -0.120 4.120 8 C 0.255 3.745 9 O -0.572 6.572 10 C -0.538 4.538 11 H 0.058 0.942 12 C 0.070 3.930 13 N -0.895 5.895 14 Si 0.899 3.101 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.274 1.274 18 H 0.027 0.973 19 H 0.034 0.966 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.375 0.625 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 0.589 4.369 6.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.041 3.959 4 H 0.075 0.925 5 C -0.183 4.183 6 C -0.162 4.162 7 C -0.158 4.158 8 C 0.215 3.785 9 O -0.380 6.380 10 C -0.577 4.577 11 H 0.076 0.924 12 C -0.132 4.132 13 N -0.535 5.535 14 Si 0.727 3.273 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.199 1.199 18 H 0.046 0.954 19 H 0.052 0.948 20 H 0.092 0.908 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.224 0.776 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.871 0.266 4.570 6.684 hybrid contribution 0.391 1.135 -1.026 1.579 sum -4.480 1.401 3.544 5.881 Atomic orbital electron populations 1.22685 0.83999 1.01338 0.98804 1.88101 1.16845 1.28102 1.94639 1.23147 0.95652 0.83524 0.93566 0.92463 1.22849 0.97850 0.99975 0.97585 1.22500 0.94961 1.00120 0.98580 1.22870 0.99367 1.00818 0.92791 1.19308 0.86859 0.81962 0.90419 1.86237 1.43465 1.29828 1.78470 1.21785 0.98961 1.23813 1.13098 0.92352 1.24986 0.95085 0.95630 0.97475 1.69660 1.03095 1.41135 1.39617 0.86479 0.78045 0.80822 0.81962 1.20558 1.21013 1.19862 0.95440 0.94784 0.90794 0.91812 0.92463 0.92252 0.93397 0.91752 0.92319 0.77552 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 15 2 O -0.36 -8.20 9.41 -56.89 -0.54 -8.73 15 3 C 0.10 2.27 3.02 -25.61 -0.08 2.20 15 4 H 0.06 1.29 7.04 -51.93 -0.37 0.93 15 5 C -0.14 -2.84 6.56 -25.07 -0.16 -3.00 15 6 C -0.12 -2.52 6.91 -24.74 -0.17 -2.70 15 7 C -0.12 -2.89 5.17 -25.07 -0.13 -3.02 15 8 C 0.25 6.64 0.98 -90.65 -0.09 6.55 15 9 O -0.57 -15.99 12.04 -56.89 -0.68 -16.68 15 10 C -0.54 -14.87 8.08 -34.44 -0.28 -15.15 15 11 H 0.06 1.59 7.33 -52.49 -0.38 1.21 15 12 C 0.07 1.90 5.25 -17.82 -0.09 1.81 15 13 N -0.90 -24.48 10.72 55.43 0.59 -23.89 15 14 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 18 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 15 19 H 0.03 0.57 8.10 -51.93 -0.42 0.15 15 20 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 22 H 0.06 1.02 8.07 -51.93 -0.42 0.60 15 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.06 1.62 7.89 -51.93 -0.41 1.21 15 26 H 0.06 1.44 7.85 -51.93 -0.41 1.04 15 27 H 0.37 10.52 7.08 45.56 0.32 10.85 15 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 LS Contribution 232.21 15.07 3.50 3.50 Total: -1.00 -29.14 232.21 -5.39 -34.52 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.33 Total: 7.02 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.59 Total: -23.89 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.22 Total: -25.41 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.14 -5.39 -34.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245034.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.114 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds