Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00034 * 2 1 4 4 H 1.09002 * 110.01681 * 330.69932 * 3 2 1 5 5 C 1.54266 * 110.07332 * 92.11745 * 3 2 1 6 6 C 1.54894 * 104.19690 * 95.69791 * 5 3 2 7 7 C 1.54884 * 102.74702 * 37.94277 * 6 5 3 8 8 C 1.53873 * 110.03411 * 209.30898 * 3 2 1 9 9 O 1.42907 * 110.03190 * 359.95135 * 8 3 2 10 10 C 1.50699 * 110.03328 * 121.33180 * 8 3 2 11 11 H 1.08000 * 120.00039 * 0.02562 * 10 8 3 12 12 C 1.37877 * 120.00054 * 180.02562 * 10 8 3 13 13 N 1.31514 * 120.00102 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00083 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46961 * 89.99701 * 14 12 10 16 16 H 1.48497 * 109.47181 * 209.99714 * 14 12 10 17 17 H 1.48497 * 109.46826 * 329.99925 * 14 12 10 18 18 H 1.08999 * 109.47296 * 300.00134 * 1 2 3 19 19 H 1.09004 * 109.46772 * 60.00593 * 1 2 3 20 20 H 1.09000 * 109.46667 * 179.97438 * 1 2 3 21 21 H 1.08998 * 110.48638 * 214.37928 * 5 3 2 22 22 H 1.09001 * 110.48707 * 337.02015 * 5 3 2 23 23 H 1.09004 * 110.75571 * 279.62799 * 6 5 3 24 24 H 1.08991 * 110.91507 * 156.33313 * 6 5 3 25 25 H 1.09002 * 110.48690 * 203.38282 * 7 6 5 26 26 H 1.09000 * 110.59769 * 80.78992 * 7 6 5 27 27 H 0.96696 * 114.00125 * 180.02562 * 9 8 3 28 28 H 0.96996 * 120.00184 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 2.0096 -0.5012 5 6 2.2745 1.7674 1.4480 6 6 3.7589 1.4025 1.6982 7 6 4.4229 1.7183 0.3350 8 6 3.3762 1.2743 -0.7077 9 8 3.6647 -0.0513 -1.1569 10 6 3.3741 2.2260 -1.8762 11 1 2.4892 2.8028 -2.1012 12 6 4.5019 2.3602 -2.6579 13 7 5.5796 1.6582 -2.3836 14 14 4.4995 3.5404 -4.1059 15 1 4.9559 4.8793 -3.6540 16 1 5.4164 3.0342 -5.1586 17 1 3.1243 3.6459 -4.6562 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 2.1257 2.8434 1.5383 22 1 1.6277 1.2322 2.1432 23 1 3.8610 0.3449 1.9418 24 1 4.1841 2.0219 2.4877 25 1 5.3440 1.1473 0.2179 26 1 4.6228 2.7860 0.2441 27 1 4.5139 -0.1365 -1.6114 28 1 6.3728 1.7524 -2.9338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245034.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -126.573998 kcal Electronic energy + Delta-G solvation = -12236.860937 eV Core-core repulsion = 10058.697265 eV Total energy + Delta-G solvation = -2178.163672 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.09582 -37.37189 -35.02749 -34.08596 -29.50188 -28.84535 -27.21784 -25.57452 -21.56732 -20.83585 -19.14863 -17.30202 -16.86251 -16.66450 -16.00686 -15.64744 -15.11662 -14.59850 -13.96105 -13.61640 -13.16163 -13.10207 -12.67172 -12.39881 -12.31408 -12.15807 -11.80202 -11.72471 -11.58267 -11.04857 -10.64877 -10.15939 -9.96765 -8.20282 -6.36829 1.39541 1.41321 1.51149 2.37637 2.99432 3.17653 3.89066 3.99214 4.12039 4.43800 4.52397 4.58421 4.67944 4.82981 4.91649 4.96084 5.02661 5.13712 5.22639 5.44199 5.53883 5.68361 5.85322 6.15983 6.51485 6.71618 7.34382 7.58251 8.84736 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046485 B = 0.015054 C = 0.013524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.196758 B = 1859.572926 C = 2069.935847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.391 6.391 3 C 0.096 3.904 4 H 0.053 0.947 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.115 4.115 8 C 0.233 3.767 9 O -0.585 6.585 10 C -0.565 4.565 11 H 0.052 0.948 12 C 0.027 3.973 13 N -0.913 5.913 14 Si 0.961 3.039 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.274 1.274 18 H 0.053 0.947 19 H 0.033 0.967 20 H 0.095 0.905 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.367 0.633 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 1.297 5.048 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.310 6.310 3 C 0.038 3.962 4 H 0.071 0.929 5 C -0.173 4.173 6 C -0.154 4.154 7 C -0.153 4.153 8 C 0.193 3.807 9 O -0.392 6.392 10 C -0.603 4.603 11 H 0.071 0.929 12 C -0.173 4.173 13 N -0.553 5.553 14 Si 0.787 3.213 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.198 1.198 18 H 0.071 0.929 19 H 0.052 0.948 20 H 0.113 0.887 21 H 0.101 0.899 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.216 0.784 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.728 0.974 5.263 7.840 hybrid contribution 0.625 0.871 -1.257 1.652 sum -5.103 1.845 4.006 6.745 Atomic orbital electron populations 1.22939 0.81225 1.03221 1.00026 1.88030 1.19945 1.28061 1.94965 1.23074 0.93946 0.83808 0.95357 0.92874 1.22811 0.97426 1.01364 0.95650 1.22449 0.95358 1.00499 0.97053 1.22684 0.98255 0.99432 0.94940 1.19692 0.89419 0.80736 0.90861 1.86231 1.43010 1.31428 1.78540 1.22068 0.99096 1.24648 1.14490 0.92936 1.25726 0.94703 0.97077 0.99808 1.69752 1.03401 1.41800 1.40319 0.85513 0.77915 0.79058 0.78854 1.19642 1.20556 1.19843 0.92852 0.94845 0.88676 0.89946 0.90064 0.92705 0.90307 0.94025 0.93515 0.78421 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 10.85 113.37 1.23 1.95 15 2 O -0.39 -17.39 9.41 -128.27 -1.21 -18.60 15 3 C 0.10 4.31 3.02 31.32 0.09 4.40 15 4 H 0.05 2.36 7.04 -2.39 -0.02 2.34 15 5 C -0.13 -4.91 6.56 31.67 0.21 -4.70 15 6 C -0.12 -4.49 6.91 31.89 0.22 -4.27 15 7 C -0.11 -5.52 5.17 31.67 0.16 -5.36 15 8 C 0.23 12.19 0.98 -10.81 -0.01 12.18 15 9 O -0.58 -33.35 12.04 -128.27 -1.54 -34.90 15 10 C -0.57 -31.47 8.08 25.60 0.21 -31.27 15 11 H 0.05 2.89 7.33 -2.91 -0.02 2.87 15 12 C 0.03 1.47 5.25 84.65 0.44 1.91 15 13 N -0.91 -50.49 10.72 21.45 0.23 -50.26 15 14 Si 0.96 42.97 29.54 68.60 2.03 45.00 15 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 18 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 19 H 0.03 1.06 8.10 -2.39 -0.02 1.04 15 20 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 21 H 0.08 2.68 8.14 -2.39 -0.02 2.67 15 22 H 0.08 2.58 8.07 -2.39 -0.02 2.56 15 23 H 0.05 2.16 8.14 -2.39 -0.02 2.14 15 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.04 2.14 7.89 -2.39 -0.02 2.12 15 26 H 0.05 2.30 7.85 -2.39 -0.02 2.28 15 27 H 0.37 21.31 7.08 -74.06 -0.52 20.79 15 28 H 0.27 14.10 8.31 -92.71 -0.77 13.33 15 Total: -1.00 -61.81 232.21 2.68 -59.13 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.61 Total: 24.78 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 2.56 Total: -25.15 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.23 Total: -50.26 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -2.75 Total: -53.50 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -61.81 2.68 -59.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245034.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.444 kcal (2) G-P(sol) polarization free energy of solvation -61.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds