Wall clock time and date at job start Mon Mar 30 2020 01:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48495 * 109.47480 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46996 * 300.00243 * 3 2 1 6 6 H 1.48502 * 109.47211 * 59.99708 * 3 2 1 7 7 C 1.38636 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99851 * 179.97438 * 7 2 1 9 9 O 1.34921 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.42905 * 116.99780 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.73108 * 329.34433 * 10 9 7 12 12 C 1.53362 * 109.73776 * 208.63974 * 10 9 7 13 13 O 1.42888 * 109.27773 * 188.09616 * 12 10 9 14 14 C 1.42892 * 114.49778 * 64.93225 * 13 12 10 15 15 C 1.53353 * 109.27743 * 295.06598 * 14 13 12 16 16 C 1.51509 * 109.73320 * 90.00230 * 10 9 7 17 17 O 1.20763 * 121.21777 * 348.03951 * 16 10 9 18 18 H 0.96994 * 120.00324 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.50244 * 308.03524 * 12 10 9 20 20 H 1.09002 * 109.50201 * 68.15318 * 12 10 9 21 21 H 1.09006 * 109.49852 * 175.12654 * 14 13 12 22 22 H 1.08994 * 109.50271 * 55.01280 * 14 13 12 23 23 H 1.08996 * 109.74324 * 292.61027 * 15 14 13 24 24 H 1.09000 * 109.77681 * 171.93051 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0001 9 8 1.3345 -2.3691 0.0005 10 6 2.1128 -3.5675 0.0005 11 1 3.0535 -3.3954 -0.5226 12 6 1.3325 -4.6920 -0.6913 13 8 2.0326 -5.9259 -0.5213 14 6 2.1193 -6.3763 0.8320 15 6 2.9612 -5.3838 1.6430 16 6 2.3914 -3.9966 1.4267 17 8 2.1680 -3.2597 2.3569 18 1 -0.4850 0.8400 -0.0004 19 1 0.3401 -4.7725 -0.2477 20 1 1.2396 -4.4697 -1.7544 21 1 2.5895 -7.3594 0.8588 22 1 1.1186 -6.4391 1.2594 23 1 3.9960 -5.4139 1.3019 24 1 2.9151 -5.6397 2.7015 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245110.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:28 Heat of formation + Delta-G solvation = -140.126966 kcal Electronic energy + Delta-G solvation = -11578.042997 eV Core-core repulsion = 9263.458529 eV Total energy + Delta-G solvation = -2314.584468 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.18993 -38.80606 -37.96280 -34.04410 -32.56977 -31.12263 -26.79250 -24.82271 -24.54652 -20.53825 -19.90503 -18.01874 -17.37718 -17.11996 -16.69248 -16.12268 -16.01371 -15.10614 -15.01709 -14.39480 -13.64638 -13.44713 -13.36007 -13.03172 -12.55720 -12.54665 -12.12097 -11.73234 -11.46166 -10.82332 -10.67227 -9.92957 -8.23280 -5.92635 0.92666 1.35094 1.41925 1.51808 2.24956 2.69676 2.93109 3.16458 3.58578 3.83355 3.98901 4.05411 4.22028 4.32015 4.60377 4.68538 4.83998 4.88679 4.98453 5.13260 6.04627 6.14256 6.53073 7.19372 7.88115 9.01170 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.069771 B = 0.011481 C = 0.010765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.219133 B = 2438.174647 C = 2600.475595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.041 4.041 3 Si 1.005 2.995 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.372 4.372 8 H 0.069 0.931 9 O -0.307 6.307 10 C -0.001 4.001 11 H 0.088 0.912 12 C 0.088 3.912 13 O -0.373 6.373 14 C 0.062 3.938 15 C -0.192 4.192 16 C 0.318 3.682 17 O -0.484 6.484 18 H 0.262 0.738 19 H 0.055 0.945 20 H 0.117 0.883 21 H 0.149 0.851 22 H 0.059 0.941 23 H 0.128 0.872 24 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 -11.560 -0.211 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.234 4.234 3 Si 0.827 3.173 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.451 4.451 8 H 0.087 0.913 9 O -0.222 6.222 10 C -0.061 4.061 11 H 0.106 0.894 12 C 0.011 3.989 13 O -0.292 6.292 14 C -0.014 4.014 15 C -0.229 4.229 16 C 0.194 3.806 17 O -0.358 6.358 18 H 0.071 0.929 19 H 0.073 0.927 20 H 0.135 0.865 21 H 0.167 0.833 22 H 0.077 0.923 23 H 0.146 0.854 24 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.206 -11.191 0.124 12.797 hybrid contribution 0.248 1.136 0.387 1.225 sum 6.454 -10.056 0.511 11.960 Atomic orbital electron populations 1.70185 1.07487 1.27276 1.53228 1.26213 0.96847 1.01967 0.98366 0.84707 0.77986 0.76484 0.78101 1.18213 1.19271 1.20523 1.21295 0.90536 0.83205 1.50022 0.91322 1.85626 1.32766 1.11241 1.92565 1.23613 0.97827 0.89606 0.95033 0.89410 1.22395 0.93644 0.80906 1.02000 1.87903 1.76960 1.36745 1.27552 1.22938 0.99626 0.98133 0.80683 1.23139 1.03483 0.91678 1.04634 1.26647 0.72555 0.89797 0.91583 1.90367 1.41442 1.57260 1.46743 0.92945 0.92680 0.86489 0.83310 0.92304 0.85425 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.34 13.67 21.61 0.30 -61.05 14 2 C -0.04 -2.48 5.49 84.82 0.47 -2.02 14 3 Si 1.01 46.82 29.55 68.60 2.03 48.85 14 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 14 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 14 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 14 7 C -0.37 -22.74 9.62 67.92 0.65 -22.08 14 8 H 0.07 3.96 7.66 -2.91 -0.02 3.93 14 9 O -0.31 -18.22 9.14 -64.07 -0.59 -18.81 14 10 C 0.00 -0.03 3.13 30.23 0.09 0.07 14 11 H 0.09 3.66 7.83 -2.39 -0.02 3.64 14 12 C 0.09 3.06 6.51 72.10 0.47 3.53 14 13 O -0.37 -10.42 10.68 -148.98 -1.59 -12.02 14 14 C 0.06 1.35 6.85 72.10 0.49 1.84 14 15 C -0.19 -4.89 6.40 30.23 0.19 -4.69 14 16 C 0.32 13.10 6.73 29.62 0.20 13.30 14 17 O -0.48 -25.10 17.29 16.37 0.28 -24.82 14 18 H 0.26 15.86 8.31 -92.71 -0.77 15.09 14 19 H 0.05 1.98 8.13 -2.39 -0.02 1.96 14 20 H 0.12 3.84 8.14 -2.39 -0.02 3.82 14 21 H 0.15 1.92 8.14 -2.38 -0.02 1.90 14 22 H 0.06 1.27 8.13 -2.39 -0.02 1.25 14 23 H 0.13 2.65 8.14 -2.39 -0.02 2.63 14 24 H 0.11 2.47 8.14 -2.39 -0.02 2.45 14 Total: -1.00 -79.04 219.00 4.19 -74.85 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 1.19 Total: 3.04 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 2.57 Total: -10.06 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.30 Total: -61.05 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -1.89 Total: -55.64 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -79.04 4.19 -74.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245110.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.276 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds