Wall clock time and date at job start Mon Mar 30 2020 01:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86802 * 119.99579 * 2 1 4 4 H 1.48498 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47063 * 300.00325 * 3 2 1 6 6 H 1.48504 * 109.46933 * 60.00022 * 3 2 1 7 7 C 1.38634 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99603 * 180.02562 * 7 2 1 9 9 O 1.34923 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.42900 * 116.99913 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.73283 * 30.00460 * 10 9 7 12 12 C 1.53362 * 109.73813 * 150.65837 * 10 9 7 13 13 O 1.42890 * 109.27972 * 171.95411 * 12 10 9 14 14 C 1.42893 * 114.49593 * 295.06920 * 13 12 10 15 15 C 1.53363 * 109.27912 * 64.93274 * 14 13 12 16 16 C 1.51512 * 109.77576 * 269.32397 * 10 9 7 17 17 O 1.20756 * 121.21550 * 11.88505 * 16 10 9 18 18 H 0.97000 * 120.00179 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.50487 * 291.89674 * 12 10 9 20 20 H 1.09005 * 109.50488 * 52.01325 * 12 10 9 21 21 H 1.09005 * 109.50227 * 184.86991 * 14 13 12 22 22 H 1.09001 * 109.50636 * 304.94605 * 14 13 12 23 23 H 1.08997 * 109.73899 * 67.39084 * 15 14 13 24 24 H 1.08997 * 109.73776 * 188.04717 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3965 1.2125 7 6 2.0091 -1.2006 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3345 -2.3691 -0.0005 10 6 2.1129 -3.5675 -0.0005 11 1 3.0585 -3.3922 0.5125 12 6 1.3397 -4.6873 0.7068 13 8 2.0387 -5.9222 0.5388 14 6 2.1126 -6.3821 -0.8120 15 6 2.9463 -5.3950 -1.6382 16 6 2.3780 -4.0066 -1.4262 17 8 2.1445 -3.2767 -2.3595 18 1 -0.4850 0.8400 0.0004 19 1 1.2569 -4.4575 1.7691 20 1 0.3431 -4.7714 0.2734 21 1 2.5829 -7.3652 -0.8365 22 1 1.1078 -6.4491 -1.2292 23 1 3.9843 -5.4224 -1.3068 24 1 2.8899 -5.6593 -2.6941 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245113.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:29 Heat of formation + Delta-G solvation = -140.153332 kcal Electronic energy + Delta-G solvation = -11576.457612 eV Core-core repulsion = 9261.872001 eV Total energy + Delta-G solvation = -2314.585611 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.18931 -38.80625 -37.96514 -34.04403 -32.56958 -31.12221 -26.79360 -24.82285 -24.54642 -20.53897 -19.90606 -18.01928 -17.38021 -17.11827 -16.69015 -16.12361 -16.01337 -15.10608 -15.01767 -14.39512 -13.64282 -13.44906 -13.36024 -13.03220 -12.55880 -12.54621 -12.12012 -11.73166 -11.46082 -10.82347 -10.67291 -9.93017 -8.23308 -5.92740 0.92623 1.35129 1.41992 1.51882 2.24958 2.69733 2.92975 3.16368 3.58818 3.83378 3.98840 4.05365 4.22029 4.31928 4.60322 4.68561 4.83963 4.88705 4.98456 5.13231 6.04612 6.14198 6.53032 7.19325 7.88149 9.01124 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.069726 B = 0.011466 C = 0.010761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.477696 B = 2441.412885 C = 2601.485000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.041 4.041 3 Si 1.005 2.995 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.372 4.372 8 H 0.069 0.931 9 O -0.307 6.307 10 C -0.001 4.001 11 H 0.088 0.912 12 C 0.088 3.912 13 O -0.373 6.373 14 C 0.062 3.938 15 C -0.191 4.191 16 C 0.318 3.682 17 O -0.484 6.484 18 H 0.262 0.738 19 H 0.117 0.883 20 H 0.055 0.945 21 H 0.149 0.851 22 H 0.059 0.941 23 H 0.128 0.872 24 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.585 -11.553 0.247 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.234 4.234 3 Si 0.827 3.173 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.451 4.451 8 H 0.087 0.913 9 O -0.222 6.222 10 C -0.061 4.061 11 H 0.106 0.894 12 C 0.010 3.990 13 O -0.292 6.292 14 C -0.014 4.014 15 C -0.229 4.229 16 C 0.194 3.806 17 O -0.358 6.358 18 H 0.071 0.929 19 H 0.135 0.865 20 H 0.073 0.927 21 H 0.167 0.833 22 H 0.077 0.923 23 H 0.146 0.854 24 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.215 -11.188 -0.089 12.798 hybrid contribution 0.242 1.132 -0.389 1.221 sum 6.457 -10.055 -0.478 11.959 Atomic orbital electron populations 1.70189 1.07495 1.27275 1.53214 1.26217 0.96848 1.01977 0.98356 0.84705 0.77991 0.76470 0.78099 1.18195 1.20524 1.19276 1.21304 0.90550 0.83205 1.50048 0.91288 1.85626 1.32768 1.11239 1.92557 1.23610 0.97855 0.89594 0.95020 0.89399 1.22402 0.93729 0.80949 1.01889 1.87904 1.76907 1.36611 1.27744 1.22941 0.99720 0.98075 0.80655 1.23138 1.03536 0.91661 1.04587 1.26641 0.72521 0.89809 0.91581 1.90365 1.41199 1.57718 1.46549 0.92946 0.86503 0.92686 0.83315 0.92301 0.85418 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.34 13.68 21.61 0.30 -61.05 14 2 C -0.04 -2.49 5.49 84.82 0.47 -2.02 14 3 Si 1.01 46.79 29.55 68.60 2.03 48.82 14 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 14 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 14 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 14 7 C -0.37 -22.76 9.65 67.91 0.66 -22.10 14 8 H 0.07 3.97 7.65 -2.91 -0.02 3.95 14 9 O -0.31 -18.22 9.13 -64.11 -0.59 -18.81 14 10 C 0.00 -0.03 3.13 30.23 0.09 0.07 14 11 H 0.09 3.66 7.82 -2.39 -0.02 3.64 14 12 C 0.09 3.06 6.51 72.10 0.47 3.53 14 13 O -0.37 -10.43 10.68 -148.98 -1.59 -12.02 14 14 C 0.06 1.34 6.85 72.10 0.49 1.84 14 15 C -0.19 -4.88 6.40 30.23 0.19 -4.69 14 16 C 0.32 13.11 6.73 29.62 0.20 13.31 14 17 O -0.48 -25.11 17.31 16.37 0.28 -24.82 14 18 H 0.26 15.86 8.31 -92.71 -0.77 15.09 14 19 H 0.12 3.84 8.14 -2.39 -0.02 3.82 14 20 H 0.05 1.98 8.13 -2.38 -0.02 1.96 14 21 H 0.15 1.91 8.14 -2.38 -0.02 1.90 14 22 H 0.06 1.27 8.13 -2.39 -0.02 1.25 14 23 H 0.13 2.65 8.14 -2.39 -0.02 2.63 14 24 H 0.11 2.47 8.14 -2.39 -0.02 2.45 14 Total: -1.00 -79.05 219.05 4.19 -74.86 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.19 Total: 3.10 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 2.57 Total: -10.07 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.30 Total: -61.05 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -1.89 Total: -55.65 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -79.05 4.19 -74.86 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245113.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.297 kcal (2) G-P(sol) polarization free energy of solvation -79.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds