Wall clock time and date at job start Mon Mar 30 2020 02:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 O 1.42900 * 109.47273 * 300.00037 * 9 7 2 12 12 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 13 13 H 1.09006 * 109.48038 * 60.02254 * 12 9 7 14 14 C 1.53092 * 109.48035 * 180.02562 * 12 9 7 15 15 C 1.53185 * 109.16245 * 177.59205 * 14 12 9 16 16 C 1.53181 * 109.03317 * 303.01967 * 15 14 12 17 17 C 1.53090 * 109.16515 * 56.97972 * 16 15 14 18 18 O 1.42905 * 109.47671 * 299.99957 * 12 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 0.96702 * 114.00584 * 300.00217 * 11 9 7 21 21 H 1.08993 * 109.52204 * 297.49453 * 14 12 9 22 22 H 1.09004 * 109.52319 * 57.68547 * 14 12 9 23 23 H 1.08996 * 109.54121 * 183.15827 * 15 14 12 24 24 H 1.09002 * 109.61628 * 62.92643 * 15 14 12 25 25 H 1.08999 * 109.52459 * 297.07771 * 16 15 14 26 26 H 1.08996 * 109.52271 * 176.88885 * 16 15 14 27 27 H 1.08998 * 109.48412 * 182.40743 * 17 16 15 28 28 H 1.09007 * 109.48935 * 62.37995 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 8 0.4299 -2.5751 1.1665 12 6 2.2453 -3.6621 -0.0005 13 1 2.8718 -3.6048 0.8897 14 6 1.4800 -4.9880 -0.0012 15 6 2.4807 -6.1462 -0.0620 16 6 3.3600 -5.9818 -1.3054 17 6 4.0527 -4.6175 -1.2544 18 8 3.0669 -3.5866 -1.1673 19 1 -0.4850 0.8401 0.0004 20 1 0.9223 -2.5300 1.9976 21 1 0.8868 -5.0667 0.9098 22 1 0.8225 -5.0287 -0.8697 23 1 1.9412 -7.0915 -0.1193 24 1 3.1061 -6.1366 0.8307 25 1 2.7406 -6.0425 -2.2003 26 1 4.1113 -6.7712 -1.3272 27 1 4.6464 -4.4773 -2.1577 28 1 4.7034 -4.5724 -0.3811 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:30 Heat of formation + Delta-G solvation = -113.544977 kcal Electronic energy + Delta-G solvation = -11949.039655 eV Core-core repulsion = 9771.440964 eV Total energy + Delta-G solvation = -2177.598691 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.77529 -35.43404 -33.08772 -32.03137 -30.63087 -26.95246 -24.44618 -23.10833 -20.72984 -19.75424 -16.80238 -15.63534 -15.56565 -14.49973 -14.48965 -14.09632 -13.59383 -13.22727 -12.54719 -12.11999 -12.07156 -11.34567 -10.98711 -10.84922 -10.70923 -10.59424 -10.44957 -10.02440 -9.89371 -8.96987 -8.78782 -8.46547 -8.06059 -5.92017 -4.07085 3.35871 3.40209 3.43462 4.47143 4.50183 5.14605 5.20580 5.26122 5.39279 5.56423 5.71056 5.87804 5.99421 6.08506 6.20340 6.28730 6.31755 6.42994 6.52481 6.76866 6.83438 7.68576 7.93763 8.11407 8.28521 8.94562 9.37749 9.66124 11.12793 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059694 B = 0.012142 C = 0.010574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.943666 B = 2305.467325 C = 2647.253053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.058 0.942 9 C 0.236 3.764 10 H 0.063 0.937 11 O -0.558 6.558 12 C 0.069 3.931 13 H 0.042 0.958 14 C -0.147 4.147 15 C -0.122 4.122 16 C -0.155 4.155 17 C 0.057 3.943 18 O -0.358 6.358 19 H 0.260 0.740 20 H 0.345 0.655 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -9.110 0.054 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.594 4.594 8 H 0.076 0.924 9 C 0.179 3.821 10 H 0.081 0.919 11 O -0.361 6.361 12 C 0.011 3.989 13 H 0.060 0.940 14 C -0.185 4.185 15 C -0.159 4.159 16 C -0.193 4.193 17 C -0.020 4.020 18 O -0.277 6.277 19 H 0.069 0.931 20 H 0.189 0.811 21 H 0.092 0.908 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.964 -8.900 -0.551 10.206 hybrid contribution 1.060 0.663 0.523 1.356 sum 6.025 -8.237 -0.028 10.205 Atomic orbital electron populations 1.70071 1.05920 1.26415 1.47766 1.25061 0.94705 0.99137 0.94080 0.86707 0.79667 0.83137 0.78664 1.21315 1.20258 1.20147 1.21572 0.93303 0.91084 1.53405 0.92383 1.19281 0.87571 0.89131 0.86163 0.91929 1.86627 1.37809 1.96237 1.15380 1.23110 0.92612 0.96213 0.87003 0.94000 1.22191 0.98252 0.95128 1.02900 1.21609 0.98017 0.98743 0.97570 1.22189 0.99664 0.98252 0.99151 1.22468 0.91155 0.87508 1.00900 1.88070 1.47286 1.48434 1.43896 0.93054 0.81142 0.90816 0.91651 0.92366 0.92445 0.91382 0.91912 0.89819 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 12.84 55.43 0.71 -25.51 15 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 15 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 15 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.56 -15.88 8.43 -34.44 -0.29 -16.17 15 8 H 0.06 1.65 7.70 -52.49 -0.40 1.25 15 9 C 0.24 6.20 2.62 -27.89 -0.07 6.13 15 10 H 0.06 1.84 8.14 -51.93 -0.42 1.41 15 11 O -0.56 -14.37 12.11 -35.23 -0.43 -14.80 15 12 C 0.07 1.49 2.35 -26.68 -0.06 1.42 15 13 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 14 C -0.15 -2.68 5.24 -26.59 -0.14 -2.82 15 15 C -0.12 -1.79 6.03 -26.54 -0.16 -1.95 15 16 C -0.15 -2.19 6.14 -26.59 -0.16 -2.35 15 17 C 0.06 0.94 6.84 37.20 0.25 1.19 15 18 O -0.36 -7.82 10.00 -35.23 -0.35 -8.17 15 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 20 H 0.34 7.76 9.04 45.56 0.41 8.17 15 21 H 0.07 1.32 7.76 -51.93 -0.40 0.92 15 22 H 0.06 1.25 8.14 -51.93 -0.42 0.82 15 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 28 H 0.04 0.62 8.14 -51.92 -0.42 0.20 15 LS Contribution 234.93 15.07 3.54 3.54 Total: -1.00 -31.38 234.93 -5.61 -36.99 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.33 Total: 3.58 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.73 Total: -12.47 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.71 Total: -25.51 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.78 Total: -22.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.38 -5.61 -36.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.555 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds