Wall clock time and date at job start Mon Mar 30 2020 02:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 O 1.42900 * 109.47273 * 300.00037 * 9 7 2 12 12 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 13 13 H 1.09006 * 109.48038 * 60.02254 * 12 9 7 14 14 C 1.53092 * 109.48035 * 180.02562 * 12 9 7 15 15 C 1.53185 * 109.16245 * 177.59205 * 14 12 9 16 16 C 1.53181 * 109.03317 * 303.01967 * 15 14 12 17 17 C 1.53090 * 109.16515 * 56.97972 * 16 15 14 18 18 O 1.42905 * 109.47671 * 299.99957 * 12 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 0.96702 * 114.00584 * 300.00217 * 11 9 7 21 21 H 1.08993 * 109.52204 * 297.49453 * 14 12 9 22 22 H 1.09004 * 109.52319 * 57.68547 * 14 12 9 23 23 H 1.08996 * 109.54121 * 183.15827 * 15 14 12 24 24 H 1.09002 * 109.61628 * 62.92643 * 15 14 12 25 25 H 1.08999 * 109.52459 * 297.07771 * 16 15 14 26 26 H 1.08996 * 109.52271 * 176.88885 * 16 15 14 27 27 H 1.08998 * 109.48412 * 182.40743 * 17 16 15 28 28 H 1.09007 * 109.48935 * 62.37995 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 8 0.4299 -2.5751 1.1665 12 6 2.2453 -3.6621 -0.0005 13 1 2.8718 -3.6048 0.8897 14 6 1.4800 -4.9880 -0.0012 15 6 2.4807 -6.1462 -0.0620 16 6 3.3600 -5.9818 -1.3054 17 6 4.0527 -4.6175 -1.2544 18 8 3.0669 -3.5866 -1.1673 19 1 -0.4850 0.8401 0.0004 20 1 0.9223 -2.5300 1.9976 21 1 0.8868 -5.0667 0.9098 22 1 0.8225 -5.0287 -0.8697 23 1 1.9412 -7.0915 -0.1193 24 1 3.1061 -6.1366 0.8307 25 1 2.7406 -6.0425 -2.2003 26 1 4.1113 -6.7712 -1.3272 27 1 4.6464 -4.4773 -2.1577 28 1 4.7034 -4.5724 -0.3811 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:30 Heat of formation + Delta-G solvation = -137.079120 kcal Electronic energy + Delta-G solvation = -11950.060172 eV Core-core repulsion = 9771.440964 eV Total energy + Delta-G solvation = -2178.619209 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.30959 -37.40254 -34.52891 -34.16759 -32.20469 -28.90301 -26.10636 -24.64099 -22.53754 -21.15635 -18.92272 -17.28066 -17.13839 -16.63239 -16.12690 -15.49660 -15.11020 -14.83038 -14.45886 -13.72611 -13.48477 -13.28183 -12.84514 -12.75590 -12.26579 -12.16286 -11.92163 -11.77080 -11.27621 -10.99019 -10.70811 -10.37135 -9.97023 -8.11779 -6.35321 1.39992 1.43043 1.51123 2.40987 2.93451 3.22537 3.92790 3.95851 4.03072 4.15818 4.31734 4.41916 4.57038 4.64017 4.82064 4.91877 4.99017 5.09437 5.15009 5.30128 5.39327 5.62285 5.71813 6.10081 6.54957 6.76118 7.32778 7.51105 8.92924 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059694 B = 0.012142 C = 0.010574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.943666 B = 2305.467325 C = 2647.253053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.962 3.038 4 H -0.282 1.282 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.571 4.571 8 H 0.055 0.945 9 C 0.234 3.766 10 H 0.019 0.981 11 O -0.569 6.569 12 C 0.079 3.921 13 H 0.047 0.953 14 C -0.142 4.142 15 C -0.117 4.117 16 C -0.150 4.150 17 C 0.046 3.954 18 O -0.396 6.396 19 H 0.261 0.739 20 H 0.359 0.641 21 H 0.073 0.927 22 H 0.048 0.952 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.259 -9.948 0.368 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.189 1.189 6 H -0.198 1.198 7 C -0.609 4.609 8 H 0.073 0.927 9 C 0.177 3.823 10 H 0.036 0.964 11 O -0.374 6.374 12 C 0.021 3.979 13 H 0.065 0.935 14 C -0.180 4.180 15 C -0.154 4.154 16 C -0.187 4.187 17 C -0.030 4.030 18 O -0.316 6.316 19 H 0.070 0.930 20 H 0.204 0.796 21 H 0.092 0.908 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.596 -9.755 -0.230 11.778 hybrid contribution 0.569 0.889 0.404 1.130 sum 7.165 -8.867 0.174 11.401 Atomic orbital electron populations 1.70208 1.07610 1.27411 1.48940 1.25943 0.95567 1.03000 0.93557 0.85586 0.78360 0.78404 0.79050 1.20741 1.18940 1.19766 1.21897 0.93293 0.92496 1.53210 0.92709 1.19061 0.87598 0.90866 0.84793 0.96358 1.86542 1.38451 1.96374 1.16006 1.22720 0.91993 0.95815 0.87331 0.93534 1.22105 0.98691 0.95076 1.02142 1.21606 0.97440 0.97842 0.98498 1.22168 1.00193 0.97797 0.98554 1.22815 0.90433 0.87480 1.02293 1.87991 1.48592 1.51169 1.43805 0.92979 0.79562 0.90818 0.93305 0.89959 0.91140 0.91978 0.88268 0.88089 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.86 12.84 21.45 0.28 -55.58 15 2 C 0.02 1.22 5.40 84.66 0.46 1.67 15 3 Si 0.96 45.05 29.54 68.60 2.03 47.07 15 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 5 H -0.26 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 15 7 C -0.57 -33.13 8.43 25.60 0.22 -32.91 15 8 H 0.05 3.14 7.70 -2.91 -0.02 3.12 15 9 C 0.23 12.67 2.62 29.85 0.08 12.75 15 10 H 0.02 1.14 8.14 -2.39 -0.02 1.13 15 11 O -0.57 -29.96 12.11 -148.98 -1.80 -31.76 15 12 C 0.08 3.43 2.35 30.63 0.07 3.50 15 13 H 0.05 1.94 8.14 -2.38 -0.02 1.92 15 14 C -0.14 -5.09 5.24 30.69 0.16 -4.93 15 15 C -0.12 -3.07 6.03 30.72 0.19 -2.88 15 16 C -0.15 -3.74 6.14 30.68 0.19 -3.56 15 17 C 0.05 1.41 6.84 72.01 0.49 1.90 15 18 O -0.40 -17.17 10.00 -148.98 -1.49 -18.66 15 19 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 20 H 0.36 16.31 9.04 -74.06 -0.67 15.64 15 21 H 0.07 2.59 7.76 -2.39 -0.02 2.57 15 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.08 1.81 8.14 -2.39 -0.02 1.80 15 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 28 H 0.05 1.44 8.14 -2.38 -0.02 1.42 15 Total: -1.00 -68.08 234.93 1.32 -66.76 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.47 Total: 16.63 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 1.85 Total: -24.45 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -3.29 Total: -50.42 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.08 1.32 -66.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.322 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds