Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99651 * 2 1 4 4 H 1.48506 * 109.46804 * 239.99856 * 3 2 1 5 5 H 1.48498 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46970 * 120.00036 * 3 2 1 7 7 C 1.37875 * 120.00642 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00299 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99613 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46587 * 299.99540 * 9 7 2 11 11 O 1.42893 * 109.47161 * 59.99867 * 9 7 2 12 12 C 1.52999 * 109.46772 * 179.97438 * 9 7 2 13 13 H 1.09002 * 109.48249 * 299.99893 * 12 9 7 14 14 C 1.53095 * 109.48552 * 179.97438 * 12 9 7 15 15 C 1.53186 * 109.16108 * 182.40370 * 14 12 9 16 16 C 1.53176 * 109.03702 * 56.98084 * 15 14 12 17 17 C 1.53098 * 109.16241 * 303.01937 * 16 15 14 18 18 O 1.42900 * 109.41322 * 57.61138 * 17 16 15 19 19 H 0.96994 * 120.00290 * 0.02562 * 1 2 3 20 20 H 0.96699 * 114.00326 * 59.99947 * 11 9 7 21 21 H 1.08997 * 109.52552 * 302.30760 * 14 12 9 22 22 H 1.09002 * 109.52029 * 62.49860 * 14 12 9 23 23 H 1.08997 * 109.54303 * 297.11242 * 15 14 12 24 24 H 1.09000 * 109.61386 * 176.89469 * 15 14 12 25 25 H 1.08997 * 109.52465 * 183.11239 * 16 15 14 26 26 H 1.08996 * 109.57271 * 62.95724 * 16 15 14 27 27 H 1.08997 * 109.47875 * 297.62336 * 17 16 15 28 28 H 1.08997 * 109.48558 * 177.59891 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4301 -2.5752 -1.1665 12 6 2.2455 -3.6620 0.0005 13 1 2.8723 -3.6044 -0.8894 14 6 1.4805 -4.9881 0.0012 15 6 2.4816 -6.1460 0.0619 16 6 3.3609 -5.9816 1.3052 17 6 4.0533 -4.6170 1.2542 18 8 3.0668 -3.5868 1.1676 19 1 -0.4850 0.8400 -0.0004 20 1 0.9224 -2.5300 -1.9975 21 1 0.8232 -5.0290 0.8697 22 1 0.8873 -5.0668 -0.9099 23 1 3.1067 -6.1347 -0.8310 24 1 1.9435 -7.0923 0.1183 25 1 4.1125 -6.7707 1.3269 26 1 2.7425 -6.0430 2.2006 27 1 4.7037 -4.5719 0.3807 28 1 4.6472 -4.4767 2.1573 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = -137.056943 kcal Electronic energy + Delta-G solvation = -11950.059197 eV Core-core repulsion = 9771.440950 eV Total energy + Delta-G solvation = -2178.618247 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.31028 -37.40347 -34.52817 -34.16788 -32.20492 -28.90301 -26.10620 -24.64096 -22.53743 -21.15815 -18.92270 -17.28157 -17.13897 -16.63271 -16.12643 -15.49609 -15.10949 -14.82949 -14.45962 -13.72595 -13.48492 -13.28212 -12.84549 -12.75534 -12.26651 -12.16348 -11.92120 -11.76976 -11.27679 -10.98993 -10.70846 -10.37187 -9.96964 -8.11707 -6.35325 1.40011 1.42984 1.51133 2.40967 2.93453 3.22562 3.92684 3.95950 4.03130 4.15840 4.31712 4.41940 4.57041 4.64037 4.82074 4.91897 4.99012 5.09537 5.15011 5.30065 5.39378 5.62268 5.71836 6.10029 6.54983 6.76113 7.32813 7.51123 8.92987 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059694 B = 0.012142 C = 0.010574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.945292 B = 2305.534011 C = 2647.310070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.571 4.571 8 H 0.055 0.945 9 C 0.234 3.766 10 H 0.019 0.981 11 O -0.569 6.569 12 C 0.079 3.921 13 H 0.047 0.953 14 C -0.142 4.142 15 C -0.116 4.116 16 C -0.150 4.150 17 C 0.046 3.954 18 O -0.396 6.396 19 H 0.261 0.739 20 H 0.359 0.641 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.259 -9.946 -0.367 12.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.609 4.609 8 H 0.073 0.927 9 C 0.177 3.823 10 H 0.036 0.964 11 O -0.374 6.374 12 C 0.021 3.979 13 H 0.065 0.935 14 C -0.180 4.180 15 C -0.154 4.154 16 C -0.187 4.187 17 C -0.030 4.030 18 O -0.316 6.316 19 H 0.070 0.930 20 H 0.204 0.796 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.597 -9.754 0.231 11.778 hybrid contribution 0.570 0.889 -0.405 1.131 sum 7.167 -8.865 -0.174 11.401 Atomic orbital electron populations 1.70202 1.07609 1.27419 1.48947 1.25938 0.95563 1.02994 0.93558 0.85590 0.78364 0.78416 0.79051 1.18951 1.20740 1.19752 1.21897 0.93293 0.92496 1.53207 0.92708 1.19062 0.87600 0.90865 0.84796 0.96351 1.86540 1.38449 1.96373 1.16005 1.22720 0.91998 0.95811 0.87326 0.93530 1.22106 0.98693 0.95075 1.02140 1.21604 0.97442 0.97845 0.98490 1.22167 1.00200 0.97798 0.98552 1.22814 0.90424 0.87486 1.02295 1.87989 1.48559 1.51248 1.43760 0.92976 0.79562 0.93306 0.90820 0.91156 0.89947 0.88281 0.91975 0.93081 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.86 12.84 21.45 0.28 -55.59 15 2 C 0.02 1.23 5.40 84.65 0.46 1.68 15 3 Si 0.96 45.04 29.54 68.60 2.03 47.06 15 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.57 -33.13 8.43 25.60 0.22 -32.91 15 8 H 0.05 3.14 7.70 -2.91 -0.02 3.12 15 9 C 0.23 12.67 2.62 29.85 0.08 12.74 15 10 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 11 O -0.57 -29.95 12.11 -148.98 -1.80 -31.75 15 12 C 0.08 3.43 2.35 30.63 0.07 3.50 15 13 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 14 C -0.14 -5.09 5.24 30.69 0.16 -4.93 15 15 C -0.12 -3.07 6.03 30.72 0.19 -2.88 15 16 C -0.15 -3.75 6.14 30.69 0.19 -3.56 15 17 C 0.05 1.41 6.84 72.01 0.49 1.90 15 18 O -0.40 -17.16 10.00 -148.98 -1.49 -18.65 15 19 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 20 H 0.36 16.31 9.04 -74.06 -0.67 15.64 15 21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.07 2.59 7.76 -2.39 -0.02 2.57 15 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 28 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 Total: -1.00 -68.07 234.93 1.32 -66.75 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.47 Total: 16.63 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 1.85 Total: -24.44 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.59 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -3.29 Total: -50.41 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.07 1.32 -66.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.310 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds