Wall clock time and date at job start Mon Mar 30 2020 02:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99726 * 2 1 4 4 H 1.48493 * 109.47035 * 269.99856 * 3 2 1 5 5 H 1.48500 * 109.47034 * 30.00028 * 3 2 1 6 6 H 1.48497 * 109.46869 * 149.99565 * 3 2 1 7 7 C 1.37875 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00416 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99955 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46953 * 60.00279 * 9 7 2 11 11 O 1.42895 * 109.47147 * 300.00764 * 9 7 2 12 12 C 1.52997 * 109.47103 * 180.02562 * 9 7 2 13 13 H 1.09002 * 109.47992 * 294.99994 * 12 9 7 14 14 C 1.53092 * 109.47830 * 174.98207 * 12 9 7 15 15 C 1.53179 * 109.16066 * 182.42095 * 14 12 9 16 16 C 1.53176 * 109.04863 * 56.96094 * 15 14 12 17 17 C 1.53092 * 109.16204 * 303.02372 * 16 15 14 18 18 O 1.42899 * 109.48403 * 55.02343 * 12 9 7 19 19 H 0.96998 * 120.00084 * 0.02562 * 1 2 3 20 20 H 0.96705 * 114.00010 * 299.99569 * 11 9 7 21 21 H 1.08996 * 109.52312 * 302.30973 * 14 12 9 22 22 H 1.09003 * 109.52603 * 62.50227 * 14 12 9 23 23 H 1.09005 * 109.53254 * 297.09283 * 15 14 12 24 24 H 1.09007 * 109.54490 * 176.83400 * 15 14 12 25 25 H 1.08997 * 109.52365 * 183.12180 * 16 15 14 26 26 H 1.08992 * 109.52230 * 62.92991 * 16 15 14 27 27 H 1.08998 * 109.48579 * 297.62866 * 17 16 15 28 28 H 1.08997 * 109.48019 * 177.58997 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 0.8895 11 8 3.9875 -0.5210 -1.1673 12 6 4.0216 -2.6364 0.0001 13 1 3.7337 -3.1237 0.9316 14 6 5.5473 -2.6384 -0.1268 15 6 6.0449 -4.0859 -0.1868 16 6 5.3630 -4.8008 -1.3574 17 6 3.8445 -4.7153 -1.1827 18 8 3.4520 -3.3435 -1.1034 19 1 -0.4850 0.8400 -0.0004 20 1 3.7019 -0.9250 -1.9982 21 1 5.8377 -2.1156 -1.0379 22 1 5.9853 -2.1380 0.7369 23 1 5.7982 -4.5950 0.7449 24 1 7.1250 -4.0944 -0.3336 25 1 5.6694 -5.8467 -1.3738 26 1 5.6495 -4.3216 -2.2935 27 1 3.5544 -5.2298 -0.2666 28 1 3.3535 -5.1851 -2.0349 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:33 Heat of formation + Delta-G solvation = -110.934431 kcal Electronic energy + Delta-G solvation = -12069.135151 eV Core-core repulsion = 9891.649661 eV Total energy + Delta-G solvation = -2177.485490 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.93805 -35.63082 -33.13970 -32.15778 -30.80451 -27.46901 -24.55190 -23.08861 -20.67212 -19.71572 -17.18029 -15.71938 -15.59018 -14.73863 -14.64142 -14.15704 -13.63175 -12.98568 -12.91618 -12.51995 -12.21151 -11.53003 -11.15622 -10.95229 -10.77157 -10.57215 -10.44432 -9.95610 -9.74950 -9.09198 -8.85300 -8.56947 -8.29339 -6.03298 -4.12353 3.48880 3.52653 3.64605 4.44625 4.57187 5.09016 5.12683 5.19959 5.27648 5.46398 5.66206 5.80533 5.87580 5.93899 6.07042 6.16764 6.20725 6.29961 6.36061 6.56773 6.77194 7.24806 7.61813 7.99582 8.42812 8.92652 9.11808 9.59826 11.07632 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065569 B = 0.013060 C = 0.011673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.931081 B = 2143.503992 C = 2398.214565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.306 1.306 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.199 3.801 10 H 0.070 0.930 11 O -0.586 6.586 12 C 0.076 3.924 13 H 0.051 0.949 14 C -0.149 4.149 15 C -0.122 4.122 16 C -0.154 4.154 17 C 0.058 3.942 18 O -0.358 6.358 19 H 0.263 0.737 20 H 0.368 0.632 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 -7.067 -1.064 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.126 4.126 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.235 1.235 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.096 0.904 9 C 0.142 3.858 10 H 0.087 0.913 11 O -0.392 6.392 12 C 0.018 3.982 13 H 0.069 0.931 14 C -0.187 4.187 15 C -0.159 4.159 16 C -0.192 4.192 17 C -0.020 4.020 18 O -0.276 6.276 19 H 0.073 0.927 20 H 0.215 0.785 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.281 -6.494 -0.740 12.182 hybrid contribution 0.275 0.215 -0.173 0.390 sum 10.556 -6.278 -0.913 12.316 Atomic orbital electron populations 1.69964 1.06586 1.27195 1.49611 1.25048 0.94718 0.99797 0.93052 0.86266 0.79053 0.81940 0.78444 1.20509 1.23470 1.19501 1.21502 0.89568 0.94957 1.52313 0.90384 1.20015 0.94537 0.85329 0.85920 0.91288 1.86281 1.77475 1.58358 1.17109 1.22827 0.90366 0.96099 0.88942 0.93060 1.22187 0.97663 0.95761 1.03072 1.21603 0.99487 0.96669 0.98160 1.22185 0.97379 1.00227 0.99410 1.22471 0.93341 0.85249 1.00906 1.88074 1.69803 1.20706 1.49029 0.92704 0.78510 0.90613 0.91667 0.92395 0.92322 0.91850 0.91351 0.94024 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 15 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 15 3 Si 0.91 23.69 26.18 -169.99 -4.45 19.24 15 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 15 5 H -0.31 -7.87 7.11 56.52 0.40 -7.47 15 6 H -0.27 -6.86 6.54 56.52 0.37 -6.49 15 7 C -0.55 -15.68 8.94 -34.44 -0.31 -15.99 15 8 H 0.08 2.45 7.80 -52.49 -0.41 2.04 15 9 C 0.20 4.82 2.24 -27.88 -0.06 4.75 15 10 H 0.07 1.69 7.20 -51.93 -0.37 1.32 15 11 O -0.59 -13.82 10.12 -40.13 -0.41 -14.23 15 12 C 0.08 1.55 2.50 -26.69 -0.07 1.48 15 13 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 14 C -0.15 -2.51 5.26 -26.59 -0.14 -2.65 15 15 C -0.12 -1.68 6.03 -26.55 -0.16 -1.84 15 16 C -0.15 -2.07 6.14 -26.59 -0.16 -2.23 15 17 C 0.06 0.91 6.84 37.21 0.25 1.17 15 18 O -0.36 -7.40 9.41 -40.13 -0.38 -7.78 15 19 H 0.26 7.71 8.31 -40.82 -0.34 7.37 15 20 H 0.37 8.12 8.72 45.56 0.40 8.52 15 21 H 0.08 1.33 7.49 -51.93 -0.39 0.94 15 22 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 228.47 15.07 3.44 3.44 Total: -1.00 -31.51 228.47 -5.08 -36.59 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.32 Total: 3.03 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.74 Total: -13.11 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.78 Total: -22.01 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.45 Total: 19.24 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.51 -5.08 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.340 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds