Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09003 * 110.45791 * 56.14583 * 3 2 1 5 5 C 1.54483 * 110.51315 * 293.54404 * 3 2 1 6 6 O 1.44418 * 104.80179 * 265.33601 * 5 3 2 7 7 C 1.44426 * 105.27720 * 319.48648 * 6 5 3 8 8 C 1.54476 * 104.80088 * 40.51221 * 7 6 5 9 9 O 1.42911 * 110.50916 * 217.37650 * 8 7 6 10 10 C 1.50700 * 110.51195 * 94.67120 * 8 7 6 11 11 H 1.08001 * 119.99895 * 245.35754 * 10 8 7 12 12 C 1.37879 * 120.00153 * 65.35342 * 10 8 7 13 13 N 1.31519 * 119.99865 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00011 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46890 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47093 * 120.00088 * 14 12 10 17 17 H 1.48503 * 109.46947 * 239.99846 * 14 12 10 18 18 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 19 19 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 21 21 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 22 22 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 23 23 H 1.09006 * 110.36643 * 24.16447 * 5 3 2 24 24 H 1.08998 * 110.37317 * 146.39121 * 5 3 2 25 25 H 1.08995 * 110.37343 * 159.34793 * 7 6 5 26 26 H 1.09006 * 110.36816 * 281.68295 * 7 6 5 27 27 H 0.96694 * 113.99993 * 294.64914 * 9 8 7 28 28 H 0.97000 * 119.99913 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6307 1.9913 0.8481 5 6 1.6756 2.1455 -1.3264 6 8 2.8418 1.9831 -2.1626 7 6 3.9706 2.1872 -1.2852 8 6 3.5846 1.4706 0.0277 9 8 4.0518 2.2101 1.1579 10 6 4.1380 0.0690 0.0467 11 1 3.4665 -0.7768 0.0400 12 6 5.5016 -0.1335 0.0727 13 7 6.3193 0.8966 0.0813 14 14 6.1875 -1.8708 0.0955 15 1 5.0673 -2.8455 0.0804 16 1 7.0423 -2.0813 -1.1005 17 1 6.9984 -2.0667 1.3241 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 0.8104 1.6662 -1.7846 24 1 1.4752 3.2028 -1.1529 25 1 4.8685 1.7401 -1.7117 26 1 4.1241 3.2514 -1.1057 27 1 5.0152 2.2598 1.2244 28 1 7.2786 0.7541 0.0999 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = -103.680289 kcal Electronic energy + Delta-G solvation = -12310.623114 eV Core-core repulsion = 10133.452188 eV Total energy + Delta-G solvation = -2177.170927 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.83924 -34.83841 -33.55565 -32.12751 -28.56942 -27.27418 -24.92770 -23.21886 -20.60987 -19.06814 -16.72632 -15.68544 -15.43374 -14.64117 -14.18759 -13.62430 -13.05178 -12.81016 -12.65686 -11.96704 -11.54139 -11.28393 -11.02092 -10.87124 -10.76495 -10.50518 -10.20965 -9.72037 -9.68660 -9.03821 -8.94527 -8.51597 -8.02868 -6.22964 -4.28651 3.22312 3.30850 3.34935 4.31124 4.94014 5.13810 5.53211 5.65359 5.78215 5.90912 6.04368 6.17204 6.25943 6.39871 6.47114 6.61284 6.73477 6.82138 6.97415 7.13411 7.24608 7.38261 7.76297 7.91799 8.15281 8.73584 9.38611 9.50317 10.84914 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040330 B = 0.017169 C = 0.014530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.110069 B = 1630.419126 C = 1926.582533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.099 4.099 3 C -0.109 4.109 4 H 0.070 0.930 5 C 0.048 3.952 6 O -0.384 6.384 7 C 0.033 3.967 8 C 0.229 3.771 9 O -0.589 6.589 10 C -0.529 4.529 11 H 0.079 0.921 12 C 0.063 3.937 13 N -0.904 5.904 14 Si 0.902 3.098 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.048 0.952 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.030 0.970 27 H 0.384 0.616 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -0.223 -0.598 5.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.127 4.127 4 H 0.089 0.911 5 C -0.029 4.029 6 O -0.303 6.303 7 C -0.044 4.044 8 C 0.189 3.811 9 O -0.399 6.399 10 C -0.567 4.567 11 H 0.097 0.903 12 C -0.138 4.138 13 N -0.545 5.545 14 Si 0.729 3.271 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.067 0.933 19 H 0.065 0.935 20 H 0.066 0.934 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.119 0.881 26 H 0.048 0.952 27 H 0.235 0.765 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.256 -0.169 -0.718 6.300 hybrid contribution 1.162 -0.794 0.112 1.412 sum -5.095 -0.963 -0.605 5.220 Atomic orbital electron populations 1.21961 0.97911 1.00591 1.00870 1.21500 0.92602 0.96483 1.03018 1.22323 0.97410 0.96248 0.96768 0.91141 1.23370 0.90000 0.98050 0.91454 1.88998 1.15536 1.92572 1.33231 1.24215 0.89536 0.97369 0.93244 1.19921 0.88173 0.90341 0.82698 1.86108 1.28648 1.76315 1.48869 1.22024 0.91958 0.92728 1.49964 0.90273 1.25094 0.97032 0.97687 0.93965 1.69589 1.03697 1.29891 1.51369 0.86372 0.78980 0.84082 0.77616 1.19600 1.20878 1.20904 0.93285 0.93460 0.93446 0.91198 0.91194 0.90296 0.93988 0.88090 0.95171 0.76461 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.74 37.16 0.36 -2.06 15 2 C -0.10 -1.95 3.88 -26.73 -0.10 -2.05 15 3 C -0.11 -2.36 2.96 -89.05 -0.26 -2.63 15 4 H 0.07 1.51 8.00 -51.93 -0.42 1.09 15 5 C 0.05 0.97 7.03 37.94 0.27 1.24 15 6 O -0.38 -9.11 11.65 -35.23 -0.41 -9.52 15 7 C 0.03 0.83 6.55 37.93 0.25 1.08 15 8 C 0.23 5.81 1.08 -90.21 -0.10 5.71 15 9 O -0.59 -15.61 12.99 -35.23 -0.46 -16.07 15 10 C -0.53 -14.10 7.42 -34.44 -0.26 -14.36 15 11 H 0.08 2.06 4.80 -52.49 -0.25 1.81 15 12 C 0.06 1.67 5.03 -17.82 -0.09 1.58 15 13 N -0.90 -24.26 10.43 55.43 0.58 -23.68 15 14 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 15 15 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 H 0.05 0.71 6.48 -51.93 -0.34 0.37 15 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.07 1.46 7.10 -51.93 -0.37 1.09 15 22 H 0.07 1.47 7.25 -51.93 -0.38 1.10 15 23 H 0.08 1.39 6.21 -51.93 -0.32 1.07 15 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 25 H 0.10 2.72 6.78 -51.93 -0.35 2.37 15 26 H 0.03 0.74 8.09 -51.93 -0.42 0.32 15 27 H 0.38 10.27 7.02 45.56 0.32 10.59 15 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 LS Contribution 224.07 15.07 3.38 3.38 Total: -1.00 -27.66 224.07 -4.79 -32.45 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.93 Total: 9.17 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.58 Total: -23.68 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.87 Total: -25.59 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -27.66 -4.79 -32.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.228 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds