Wall clock time and date at job start Mon Mar 30 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09003 * 110.45791 * 56.14583 * 3 2 1 5 5 C 1.54483 * 110.51315 * 293.54404 * 3 2 1 6 6 O 1.44418 * 104.80179 * 265.33601 * 5 3 2 7 7 C 1.44426 * 105.27720 * 319.48648 * 6 5 3 8 8 C 1.54476 * 104.80088 * 40.51221 * 7 6 5 9 9 O 1.42911 * 110.50916 * 217.37650 * 8 7 6 10 10 C 1.50700 * 110.51195 * 94.67120 * 8 7 6 11 11 H 1.08001 * 119.99895 * 245.35754 * 10 8 7 12 12 C 1.37879 * 120.00153 * 65.35342 * 10 8 7 13 13 N 1.31519 * 119.99865 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00011 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46890 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47093 * 120.00088 * 14 12 10 17 17 H 1.48503 * 109.46947 * 239.99846 * 14 12 10 18 18 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 19 19 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 21 21 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 22 22 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 23 23 H 1.09006 * 110.36643 * 24.16447 * 5 3 2 24 24 H 1.08998 * 110.37317 * 146.39121 * 5 3 2 25 25 H 1.08995 * 110.37343 * 159.34793 * 7 6 5 26 26 H 1.09006 * 110.36816 * 281.68295 * 7 6 5 27 27 H 0.96694 * 113.99993 * 294.64914 * 9 8 7 28 28 H 0.97000 * 119.99913 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6307 1.9913 0.8481 5 6 1.6756 2.1455 -1.3264 6 8 2.8418 1.9831 -2.1626 7 6 3.9706 2.1872 -1.2852 8 6 3.5846 1.4706 0.0277 9 8 4.0518 2.2101 1.1579 10 6 4.1380 0.0690 0.0467 11 1 3.4665 -0.7768 0.0400 12 6 5.5016 -0.1335 0.0727 13 7 6.3193 0.8966 0.0813 14 14 6.1875 -1.8708 0.0955 15 1 5.0673 -2.8455 0.0804 16 1 7.0423 -2.0813 -1.1005 17 1 6.9984 -2.0667 1.3241 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 0.8104 1.6662 -1.7846 24 1 1.4752 3.2028 -1.1529 25 1 4.8685 1.7401 -1.7117 26 1 4.1241 3.2514 -1.1057 27 1 5.0152 2.2598 1.2244 28 1 7.2786 0.7541 0.0999 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:48 Heat of formation + Delta-G solvation = -123.708986 kcal Electronic energy + Delta-G solvation = -12311.491624 eV Core-core repulsion = 10133.452188 eV Total energy + Delta-G solvation = -2178.039436 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.66442 -36.80866 -35.18165 -34.16952 -30.34505 -28.98687 -26.92145 -24.81182 -22.41025 -20.86929 -18.68680 -17.56941 -17.29210 -16.41653 -16.00923 -15.46903 -14.71611 -14.64358 -14.23591 -13.79922 -13.30616 -13.15724 -12.76530 -12.48376 -12.43037 -12.32266 -11.93831 -11.56063 -11.28418 -10.93751 -10.78887 -10.46267 -10.02816 -8.23615 -6.35713 1.39449 1.42700 1.53162 2.38839 2.98150 3.28769 3.84975 4.06018 4.19407 4.37033 4.51607 4.54257 4.70407 4.74250 4.89335 4.93580 5.15236 5.21353 5.28194 5.39190 5.51979 5.62924 5.74878 6.02156 6.19299 6.70127 7.33035 7.41864 8.83432 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040330 B = 0.017169 C = 0.014530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.110069 B = 1630.419126 C = 1926.582533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.110 4.110 4 H 0.073 0.927 5 C 0.048 3.952 6 O -0.397 6.397 7 C 0.042 3.958 8 C 0.210 3.790 9 O -0.597 6.597 10 C -0.548 4.548 11 H 0.080 0.920 12 C 0.019 3.981 13 N -0.922 5.922 14 Si 0.961 3.039 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.280 1.280 18 H 0.063 0.937 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.111 0.889 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.378 0.622 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 -0.815 -0.743 7.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.128 4.128 4 H 0.092 0.908 5 C -0.028 4.028 6 O -0.316 6.316 7 C -0.035 4.035 8 C 0.170 3.830 9 O -0.406 6.406 10 C -0.586 4.586 11 H 0.098 0.902 12 C -0.180 4.180 13 N -0.564 5.564 14 Si 0.787 3.213 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.206 1.206 18 H 0.082 0.918 19 H 0.083 0.917 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.129 0.871 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.229 0.771 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.603 -0.757 -0.862 7.689 hybrid contribution 1.560 -0.575 0.160 1.671 sum -6.042 -1.332 -0.703 6.227 Atomic orbital electron populations 1.21875 0.94191 1.02224 1.02132 1.21390 0.95781 0.94677 1.01290 1.22382 0.94752 0.97862 0.97839 0.90826 1.23615 0.89535 0.99404 0.90295 1.88967 1.16203 1.92726 1.33751 1.23948 0.89350 0.97003 0.93244 1.20226 0.90704 0.89777 0.82292 1.86102 1.28213 1.76616 1.49671 1.22305 0.92450 0.93512 1.50320 0.90159 1.25811 0.97389 1.01064 0.93712 1.69670 1.03873 1.31355 1.51496 0.85455 0.78261 0.80110 0.77512 1.19164 1.20731 1.20563 0.91774 0.91739 0.92383 0.93011 0.92910 0.87121 0.92237 0.90712 0.95116 0.77126 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.74 71.98 0.70 -3.36 15 2 C -0.09 -3.55 3.88 30.60 0.12 -3.44 15 3 C -0.11 -4.60 2.96 -9.78 -0.03 -4.63 15 4 H 0.07 3.02 8.00 -2.39 -0.02 3.00 15 5 C 0.05 1.80 7.03 72.49 0.51 2.31 15 6 O -0.40 -18.39 11.65 -148.98 -1.74 -20.13 15 7 C 0.04 2.11 6.55 72.48 0.47 2.58 15 8 C 0.21 10.64 1.08 -10.53 -0.01 10.63 15 9 O -0.60 -31.83 12.99 -148.98 -1.94 -33.77 15 10 C -0.55 -29.30 7.42 25.60 0.19 -29.11 15 11 H 0.08 4.18 4.80 -2.91 -0.01 4.17 15 12 C 0.02 1.01 5.03 84.65 0.43 1.44 15 13 N -0.92 -49.98 10.43 21.45 0.22 -49.76 15 14 Si 0.96 42.55 29.54 68.60 2.03 44.58 15 15 H -0.27 -11.55 7.11 99.48 0.71 -10.85 15 16 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 17 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 18 H 0.06 1.58 6.48 -2.39 -0.02 1.56 15 19 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.05 2.11 7.10 -2.39 -0.02 2.10 15 22 H 0.05 2.16 7.25 -2.39 -0.02 2.14 15 23 H 0.11 3.47 6.21 -2.38 -0.01 3.46 15 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.07 4.12 6.78 -2.39 -0.02 4.10 15 26 H 0.03 1.51 8.09 -2.38 -0.02 1.49 15 27 H 0.38 20.64 7.02 -74.06 -0.52 20.12 15 28 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 Total: -1.00 -57.91 224.07 1.60 -56.31 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.64 Total: 26.35 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 2.38 Total: -23.58 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.22 Total: -49.76 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -3.67 Total: -53.90 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -57.91 1.60 -56.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.402 kcal (2) G-P(sol) polarization free energy of solvation -57.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds