Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47091 * 2 1 4 4 H 1.08998 * 110.45461 * 307.59870 * 3 2 1 5 5 C 1.54476 * 110.62723 * 70.28541 * 3 2 1 6 6 O 1.44433 * 104.80185 * 142.68474 * 5 3 2 7 7 C 1.44789 * 105.29155 * 319.45395 * 6 5 3 8 8 C 1.54476 * 104.63111 * 40.53339 * 7 6 5 9 9 O 1.42903 * 110.51278 * 217.27651 * 8 7 6 10 10 C 1.50699 * 110.50524 * 94.70308 * 8 7 6 11 11 H 1.08006 * 120.00168 * 246.04708 * 10 8 7 12 12 C 1.37874 * 120.00291 * 66.05546 * 10 8 7 13 13 N 1.31516 * 119.99729 * 353.27310 * 12 10 8 14 14 Si 1.86801 * 120.00352 * 172.99960 * 12 10 8 15 15 H 1.48497 * 109.47268 * 180.27334 * 14 12 10 16 16 H 1.48496 * 109.47163 * 300.27423 * 14 12 10 17 17 H 1.48502 * 109.46868 * 60.27492 * 14 12 10 18 18 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47745 * 300.00234 * 1 2 3 20 20 H 1.09003 * 109.47180 * 60.00504 * 1 2 3 21 21 H 1.08995 * 109.47745 * 239.99766 * 2 1 3 22 22 H 1.09003 * 109.47180 * 119.99496 * 2 1 3 23 23 H 1.09001 * 110.37233 * 261.51251 * 5 3 2 24 24 H 1.09001 * 110.37485 * 23.74219 * 5 3 2 25 25 H 1.09009 * 110.42147 * 281.77250 * 7 6 5 26 26 H 1.08994 * 110.48464 * 159.32869 * 7 6 5 27 27 H 0.96701 * 113.99690 * 302.79655 * 9 8 7 28 28 H 0.96993 * 120.00372 * 354.16035 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5794 2.0094 -0.8091 5 6 1.7615 2.1182 1.3610 6 8 2.9172 2.9499 1.6033 7 6 4.0525 2.1608 1.1734 8 6 3.5796 1.4724 -0.1261 9 8 4.1011 0.1445 -0.2077 10 6 3.9952 2.2766 -1.3309 11 1 3.2461 2.7435 -1.9532 12 6 5.3318 2.4163 -1.6388 13 7 6.2481 1.9620 -0.8120 14 14 5.8413 3.2440 -3.2341 15 1 7.3230 3.2630 -3.3307 16 1 5.2800 2.4905 -4.3840 17 1 5.3260 4.6366 -3.2557 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 0.8601 2.7284 1.3044 24 1 1.6617 1.3668 2.1443 25 1 4.3050 1.4153 1.9276 26 1 4.9095 2.8035 0.9722 27 1 5.0661 0.0976 -0.1652 28 1 5.9880 1.6055 0.0518 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245317.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = -108.672155 kcal Electronic energy + Delta-G solvation = -12279.790329 eV Core-core repulsion = 10102.402939 eV Total energy + Delta-G solvation = -2177.387390 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.04070 -35.28081 -33.73963 -32.17112 -28.73924 -27.20683 -24.83498 -23.23679 -20.83107 -19.18343 -17.94956 -15.62593 -15.14538 -14.61544 -14.07397 -13.85019 -13.64740 -13.12062 -12.42770 -12.35947 -11.85911 -11.37364 -11.12392 -10.79871 -10.74590 -10.31783 -10.21172 -10.11319 -9.87716 -9.25000 -9.03183 -8.55949 -8.07759 -6.52133 -4.32168 3.38248 3.39111 3.58263 4.40642 4.74641 5.10263 5.44517 5.47974 5.63025 5.72495 5.83474 5.88732 6.02165 6.18633 6.29659 6.37145 6.50907 6.53467 6.75115 6.89877 7.01973 7.08083 7.61740 7.92316 8.22233 8.59331 8.98212 9.37511 10.77132 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.047432 B = 0.014753 C = 0.013620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.182806 B = 1897.411516 C = 2055.333103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.102 4.102 4 H 0.080 0.920 5 C 0.049 3.951 6 O -0.379 6.379 7 C 0.017 3.983 8 C 0.212 3.788 9 O -0.579 6.579 10 C -0.599 4.599 11 H 0.057 0.943 12 C 0.027 3.973 13 N -0.910 5.910 14 Si 1.070 2.930 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.286 1.286 18 H 0.047 0.953 19 H 0.047 0.953 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.367 0.633 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 -1.675 1.644 6.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 C -0.121 4.121 4 H 0.098 0.902 5 C -0.028 4.028 6 O -0.298 6.298 7 C -0.060 4.060 8 C 0.173 3.827 9 O -0.387 6.387 10 C -0.637 4.637 11 H 0.076 0.924 12 C -0.176 4.176 13 N -0.551 5.551 14 Si 0.897 3.103 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.212 1.212 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.115 0.885 27 H 0.216 0.784 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.697 -1.230 0.772 5.879 hybrid contribution -0.748 -0.375 0.946 1.263 sum -6.445 -1.605 1.718 6.861 Atomic orbital electron populations 1.21865 0.97233 1.00697 1.01172 1.21198 0.93380 0.96295 1.02676 1.22486 0.96453 0.96109 0.97028 0.90150 1.23393 0.89904 0.93650 0.95814 1.89081 1.15856 1.39613 1.85207 1.24551 0.89999 0.95419 0.96060 1.20146 0.89265 0.80729 0.92598 1.86319 1.25654 1.29790 1.96900 1.22416 0.95026 1.34332 1.11949 0.92447 1.25956 0.92688 0.95112 1.03836 1.70982 1.35926 1.39531 1.08613 0.83532 0.76326 0.75981 0.74444 1.20557 1.21217 1.21233 0.93400 0.93356 0.93072 0.91185 0.92482 0.90482 0.93497 0.94766 0.88470 0.78409 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.79 37.15 0.36 -1.91 15 2 C -0.10 -1.85 4.41 -26.73 -0.12 -1.97 15 3 C -0.10 -2.21 2.74 -89.05 -0.24 -2.45 15 4 H 0.08 1.78 7.46 -51.93 -0.39 1.39 15 5 C 0.05 0.99 6.52 37.93 0.25 1.23 15 6 O -0.38 -8.96 11.66 -35.23 -0.41 -9.37 15 7 C 0.02 0.42 5.79 37.93 0.22 0.64 15 8 C 0.21 5.34 1.01 -90.21 -0.09 5.25 15 9 O -0.58 -14.57 11.25 -35.23 -0.40 -14.96 15 10 C -0.60 -16.64 8.23 -34.44 -0.28 -16.93 15 11 H 0.06 1.60 7.39 -52.48 -0.39 1.22 15 12 C 0.03 0.75 5.11 -17.82 -0.09 0.66 15 13 N -0.91 -25.66 12.49 55.43 0.69 -24.97 15 14 Si 1.07 24.56 29.91 -169.99 -5.08 19.48 15 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 16 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.05 0.66 7.63 -51.93 -0.40 0.27 15 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.07 1.44 7.70 -51.93 -0.40 1.04 15 22 H 0.06 1.08 7.91 -51.93 -0.41 0.67 15 23 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.05 0.86 7.75 -51.93 -0.40 0.46 15 25 H 0.03 0.79 8.09 -51.92 -0.42 0.37 15 26 H 0.10 2.57 6.30 -51.93 -0.33 2.24 15 27 H 0.37 9.22 6.66 45.56 0.30 9.53 15 28 H 0.27 7.26 4.33 -40.82 -0.18 7.08 15 LS Contribution 225.89 15.07 3.40 3.40 Total: -1.00 -29.22 225.89 -4.86 -34.08 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.07 Total: 7.81 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 0.00 Total: -15.48 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.69 Total: -24.97 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.81 Total: -24.33 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.22 -4.86 -34.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245317.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.589 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds