Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47091 * 2 1 4 4 H 1.08998 * 110.45461 * 307.59870 * 3 2 1 5 5 C 1.54476 * 110.62723 * 70.28541 * 3 2 1 6 6 O 1.44433 * 104.80185 * 142.68474 * 5 3 2 7 7 C 1.44789 * 105.29155 * 319.45395 * 6 5 3 8 8 C 1.54476 * 104.63111 * 40.53339 * 7 6 5 9 9 O 1.42903 * 110.51278 * 217.27651 * 8 7 6 10 10 C 1.50699 * 110.50524 * 94.70308 * 8 7 6 11 11 H 1.08006 * 120.00168 * 246.04708 * 10 8 7 12 12 C 1.37874 * 120.00291 * 66.05546 * 10 8 7 13 13 N 1.31516 * 119.99729 * 353.27310 * 12 10 8 14 14 Si 1.86801 * 120.00352 * 172.99960 * 12 10 8 15 15 H 1.48497 * 109.47268 * 180.27334 * 14 12 10 16 16 H 1.48496 * 109.47163 * 300.27423 * 14 12 10 17 17 H 1.48502 * 109.46868 * 60.27492 * 14 12 10 18 18 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47745 * 300.00234 * 1 2 3 20 20 H 1.09003 * 109.47180 * 60.00504 * 1 2 3 21 21 H 1.08995 * 109.47745 * 239.99766 * 2 1 3 22 22 H 1.09003 * 109.47180 * 119.99496 * 2 1 3 23 23 H 1.09001 * 110.37233 * 261.51251 * 5 3 2 24 24 H 1.09001 * 110.37485 * 23.74219 * 5 3 2 25 25 H 1.09009 * 110.42147 * 281.77250 * 7 6 5 26 26 H 1.08994 * 110.48464 * 159.32869 * 7 6 5 27 27 H 0.96701 * 113.99690 * 302.79655 * 9 8 7 28 28 H 0.96993 * 120.00372 * 354.16035 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5794 2.0094 -0.8091 5 6 1.7615 2.1182 1.3610 6 8 2.9172 2.9499 1.6033 7 6 4.0525 2.1608 1.1734 8 6 3.5796 1.4724 -0.1261 9 8 4.1011 0.1445 -0.2077 10 6 3.9952 2.2766 -1.3309 11 1 3.2461 2.7435 -1.9532 12 6 5.3318 2.4163 -1.6388 13 7 6.2481 1.9620 -0.8120 14 14 5.8413 3.2440 -3.2341 15 1 7.3230 3.2630 -3.3307 16 1 5.2800 2.4905 -4.3840 17 1 5.3260 4.6366 -3.2557 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 0.8601 2.7284 1.3044 24 1 1.6617 1.3668 2.1443 25 1 4.3050 1.4153 1.9276 26 1 4.9095 2.8035 0.9722 27 1 5.0661 0.0976 -0.1652 28 1 5.9880 1.6055 0.0518 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245317.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = -129.570873 kcal Electronic energy + Delta-G solvation = -12280.696566 eV Core-core repulsion = 10102.402939 eV Total energy + Delta-G solvation = -2178.293626 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.86708 -37.22124 -35.33883 -34.21958 -30.47815 -28.92903 -26.89269 -24.76284 -22.63180 -20.94271 -19.97908 -17.46880 -16.92876 -16.41428 -15.85612 -15.70399 -15.50919 -14.76026 -14.06404 -13.89453 -13.78943 -12.93258 -12.88211 -12.58626 -12.52137 -12.11222 -11.95174 -11.76393 -11.42024 -11.11508 -10.88457 -10.56939 -10.09520 -8.67867 -6.50100 1.52242 1.57403 1.78613 2.50359 2.86991 3.14439 3.70875 3.87324 3.95973 4.10818 4.29084 4.39427 4.47987 4.55588 4.70755 4.79513 4.96248 5.01955 5.09599 5.25081 5.37200 5.51931 5.75035 5.92518 6.05308 6.45620 6.95913 7.26578 8.62646 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.047432 B = 0.014753 C = 0.013620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.182806 B = 1897.411516 C = 2055.333103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.103 4.103 4 H 0.070 0.930 5 C 0.050 3.950 6 O -0.395 6.395 7 C 0.026 3.974 8 C 0.195 3.805 9 O -0.579 6.579 10 C -0.623 4.623 11 H 0.047 0.953 12 C -0.015 4.015 13 N -0.926 5.926 14 Si 1.113 2.887 15 H -0.279 1.279 16 H -0.274 1.274 17 H -0.274 1.274 18 H 0.067 0.933 19 H 0.065 0.935 20 H 0.053 0.947 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.363 0.637 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 -1.731 1.714 8.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.122 4.122 4 H 0.088 0.912 5 C -0.027 4.027 6 O -0.315 6.315 7 C -0.052 4.052 8 C 0.156 3.844 9 O -0.386 6.386 10 C -0.661 4.661 11 H 0.065 0.935 12 C -0.214 4.214 13 N -0.567 5.567 14 Si 0.934 3.066 15 H -0.204 1.204 16 H -0.200 1.200 17 H -0.199 1.199 18 H 0.086 0.914 19 H 0.084 0.916 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.126 0.874 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.211 0.789 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.010 -1.295 0.858 7.180 hybrid contribution -0.370 -0.373 0.951 1.087 sum -7.380 -1.668 1.810 7.779 Atomic orbital electron populations 1.21797 0.93756 1.02412 1.02188 1.21124 0.96349 0.93993 1.01423 1.22501 0.93829 0.98018 0.97852 0.91186 1.23636 0.89568 0.94241 0.95207 1.89048 1.16636 1.40566 1.85202 1.24298 0.89735 0.94990 0.96179 1.20344 0.91785 0.80243 0.92041 1.86316 1.25359 1.30007 1.96923 1.22728 0.95194 1.35085 1.13079 0.93506 1.27203 0.92959 0.95139 1.06126 1.71043 1.36281 1.40389 1.08947 0.82979 0.76108 0.75899 0.71565 1.20420 1.19972 1.19913 0.91409 0.91604 0.92789 0.93589 0.92603 0.87406 0.91300 0.93562 0.91137 0.78852 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.79 71.98 0.70 -3.13 15 2 C -0.09 -3.29 4.41 30.59 0.13 -3.15 15 3 C -0.10 -4.34 2.74 -9.78 -0.03 -4.36 15 4 H 0.07 3.05 7.46 -2.39 -0.02 3.03 15 5 C 0.05 1.85 6.52 72.48 0.47 2.32 15 6 O -0.40 -18.22 11.66 -148.98 -1.74 -19.96 15 7 C 0.03 1.25 5.79 72.48 0.42 1.67 15 8 C 0.20 9.83 1.01 -10.53 -0.01 9.82 15 9 O -0.58 -29.30 11.25 -148.98 -1.68 -30.97 15 10 C -0.62 -34.89 8.23 25.60 0.21 -34.68 15 11 H 0.05 2.64 7.39 -2.91 -0.02 2.62 15 12 C -0.02 -0.84 5.11 84.65 0.43 -0.41 15 13 N -0.93 -52.71 12.49 21.45 0.27 -52.44 15 14 Si 1.11 49.28 29.91 68.60 2.05 51.33 15 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 16 H -0.27 -11.53 7.11 99.48 0.71 -10.83 15 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 18 H 0.07 1.55 8.14 -2.39 -0.02 1.53 15 19 H 0.06 1.53 7.63 -2.39 -0.02 1.51 15 20 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.05 1.85 7.70 -2.39 -0.02 1.84 15 22 H 0.06 2.00 7.91 -2.39 -0.02 1.99 15 23 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 24 H 0.07 2.29 7.75 -2.39 -0.02 2.27 15 25 H 0.05 2.12 8.09 -2.38 -0.02 2.10 15 26 H 0.07 3.80 6.30 -2.39 -0.02 3.79 15 27 H 0.36 18.58 6.66 -74.06 -0.49 18.09 15 28 H 0.26 14.62 4.33 -92.71 -0.40 14.21 15 Total: -1.00 -61.64 225.89 2.26 -59.38 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 1.02 Total: 24.58 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 2.34 Total: -31.92 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.27 Total: -52.44 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -3.41 Total: -50.93 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.33 kcal Total: -61.64 2.26 -59.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245317.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.192 kcal (2) G-P(sol) polarization free energy of solvation -61.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds