Wall clock time and date at job start Mon Mar 30 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47374 * 2 1 4 4 H 1.08999 * 110.56094 * 52.32263 * 3 2 1 5 5 C 1.54469 * 110.51348 * 289.64588 * 3 2 1 6 6 O 1.44429 * 104.80497 * 265.33190 * 5 3 2 7 7 C 1.44422 * 105.26993 * 319.48737 * 6 5 3 8 8 C 1.54475 * 104.80524 * 40.51490 * 7 6 5 9 9 O 1.42897 * 110.63001 * 94.72072 * 8 7 6 10 10 C 1.50706 * 110.51130 * 217.37563 * 8 7 6 11 11 H 1.07995 * 120.00167 * 114.36126 * 10 8 7 12 12 C 1.37879 * 119.99394 * 294.63824 * 10 8 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10 18 18 H 1.08998 * 109.47473 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.47052 * 299.99975 * 1 2 3 20 20 H 1.09001 * 109.47074 * 59.99885 * 1 2 3 21 21 H 1.09004 * 109.47056 * 240.00580 * 2 1 3 22 22 H 1.08998 * 109.47494 * 120.00750 * 2 1 3 23 23 H 1.09000 * 110.37699 * 24.16397 * 5 3 2 24 24 H 1.09003 * 110.37564 * 146.38952 * 5 3 2 25 25 H 1.09000 * 110.37494 * 281.67737 * 7 6 5 26 26 H 1.09005 * 110.36938 * 159.34487 * 7 6 5 27 27 H 0.96699 * 114.00283 * 63.38883 * 9 8 7 28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5796 2.0114 0.8077 5 6 1.7619 2.1150 -1.3625 6 8 2.9793 1.9346 -2.1185 7 6 4.0496 2.1594 -1.1752 8 6 3.5797 1.4723 0.1261 9 8 4.1010 0.1445 0.2109 10 6 3.9954 2.2792 1.3291 11 1 3.2460 2.7401 1.9554 12 6 5.3328 2.4337 1.6268 13 7 6.2456 1.8774 0.8607 14 14 5.8480 3.4333 3.1184 15 1 5.9425 2.5425 4.3028 16 1 7.1706 4.0584 2.8624 17 1 4.8408 4.4937 3.3756 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 0.9276 1.6250 -1.8644 24 1 1.5516 3.1758 -1.2263 25 1 4.1921 3.2274 -1.0104 26 1 4.9727 1.7034 -1.5331 27 1 5.0657 0.1032 0.2624 28 1 7.1864 1.9864 1.0701 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245318.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:51 Heat of formation + Delta-G solvation = -131.326619 kcal Electronic energy + Delta-G solvation = -12238.034241 eV Core-core repulsion = 10059.664480 eV Total energy + Delta-G solvation = -2178.369761 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60616 -36.73384 -35.05203 -34.13037 -30.68613 -28.84861 -26.78541 -24.82106 -22.39700 -20.68367 -19.10089 -17.20278 -17.17640 -16.76027 -16.07210 -15.42277 -14.92491 -14.47652 -13.92712 -13.57689 -13.27700 -13.16568 -12.93745 -12.69393 -12.37368 -12.29073 -12.16896 -11.73044 -11.26735 -11.04473 -10.69737 -10.50112 -10.01679 -8.27620 -6.42814 1.39987 1.41900 1.51498 2.35896 2.98303 3.28091 3.90263 4.02541 4.19803 4.27600 4.50900 4.58621 4.67529 4.78725 4.85511 4.97070 5.12565 5.19991 5.25592 5.44644 5.50123 5.63220 5.75572 5.89658 6.15500 6.65302 7.29193 7.44091 8.79149 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.049617 B = 0.014414 C = 0.013289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.184099 B = 1942.121193 C = 2106.510213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.110 4.110 4 H 0.079 0.921 5 C 0.049 3.951 6 O -0.408 6.408 7 C 0.048 3.952 8 C 0.215 3.785 9 O -0.586 6.586 10 C -0.560 4.560 11 H 0.060 0.940 12 C 0.026 3.974 13 N -0.917 5.917 14 Si 0.964 3.036 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.268 1.268 18 H 0.064 0.936 19 H 0.057 0.943 20 H 0.064 0.936 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.373 0.627 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 0.217 -0.669 6.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.129 4.129 4 H 0.098 0.902 5 C -0.027 4.027 6 O -0.327 6.327 7 C -0.029 4.029 8 C 0.175 3.825 9 O -0.394 6.394 10 C -0.597 4.597 11 H 0.078 0.922 12 C -0.174 4.174 13 N -0.557 5.557 14 Si 0.790 3.210 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.193 1.193 18 H 0.083 0.917 19 H 0.076 0.924 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.127 0.873 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.223 0.777 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.300 -0.007 -0.950 7.361 hybrid contribution 1.422 0.726 0.958 1.862 sum -5.878 0.719 0.008 5.922 Atomic orbital electron populations 1.21826 0.93928 1.02220 1.02182 1.21070 0.96057 0.94742 1.00949 1.22606 0.94747 0.97844 0.97681 0.90235 1.23604 0.88085 0.99725 0.91264 1.88942 1.16618 1.92166 1.35014 1.23972 0.89705 0.98857 0.90388 1.20093 0.90145 0.80641 0.91587 1.86140 1.26858 1.29614 1.96815 1.21955 0.92760 1.32849 1.12175 0.92162 1.25791 0.96435 0.95995 0.99207 1.69683 1.01578 1.45205 1.39241 0.85458 0.77631 0.78746 0.79213 1.20194 1.20524 1.19283 0.91746 0.92407 0.91716 0.93591 0.93626 0.87310 0.92101 0.93971 0.91577 0.77693 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.78 71.98 0.70 -3.30 15 2 C -0.09 -3.44 4.43 30.59 0.14 -3.30 15 3 C -0.11 -4.64 2.75 -9.78 -0.03 -4.66 15 4 H 0.08 3.27 7.46 -2.39 -0.02 3.25 15 5 C 0.05 1.88 7.03 72.48 0.51 2.39 15 6 O -0.41 -18.74 11.65 -148.98 -1.74 -20.47 15 7 C 0.05 2.39 6.16 72.48 0.45 2.84 15 8 C 0.22 10.91 1.05 -10.52 -0.01 10.90 15 9 O -0.59 -31.21 11.29 -148.98 -1.68 -32.89 15 10 C -0.56 -30.02 8.12 25.60 0.21 -29.82 15 11 H 0.06 3.18 7.38 -2.91 -0.02 3.16 15 12 C 0.03 1.37 5.28 84.66 0.45 1.81 15 13 N -0.92 -49.31 10.90 21.45 0.23 -49.08 15 14 Si 0.96 41.87 29.54 68.60 2.03 43.90 15 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 16 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 18 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.06 1.58 6.73 -2.39 -0.02 1.57 15 21 H 0.05 1.85 8.07 -2.39 -0.02 1.83 15 22 H 0.04 1.90 7.70 -2.39 -0.02 1.88 15 23 H 0.11 3.42 6.48 -2.39 -0.02 3.41 15 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.04 2.16 7.86 -2.39 -0.02 2.14 15 26 H 0.07 3.50 8.03 -2.38 -0.02 3.48 15 27 H 0.37 20.48 7.06 -74.06 -0.52 19.96 15 28 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 Total: -1.00 -57.60 228.81 1.88 -55.72 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.62 Total: 25.96 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 2.41 Total: -23.14 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.23 Total: -49.08 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -3.42 Total: -53.36 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -57.60 1.88 -55.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245318.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.605 kcal (2) G-P(sol) polarization free energy of solvation -57.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds