Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 H 1.08996 * 110.56671 * 307.67723 * 3 2 1 5 5 C 1.54481 * 110.51424 * 70.35973 * 3 2 1 6 6 O 1.44422 * 104.80535 * 142.62170 * 5 3 2 7 7 C 1.44433 * 105.27452 * 319.49061 * 6 5 3 8 8 C 1.54479 * 104.80518 * 40.51075 * 7 6 5 9 9 O 1.42903 * 110.51060 * 94.66515 * 8 7 6 10 10 C 1.50697 * 110.51268 * 217.37784 * 8 7 6 11 11 H 1.08003 * 119.99772 * 114.64432 * 10 8 7 12 12 C 1.37873 * 120.00165 * 294.64250 * 10 8 7 13 13 N 1.31519 * 119.99699 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00264 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46992 * 60.00247 * 14 12 10 16 16 H 1.48506 * 109.47183 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47208 * 299.99898 * 14 12 10 18 18 H 1.09003 * 109.46917 * 300.00273 * 1 2 3 19 19 H 1.08998 * 109.47424 * 59.99713 * 1 2 3 20 20 H 1.08997 * 109.47574 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46900 * 240.00283 * 2 1 3 22 22 H 1.08998 * 109.47424 * 120.00287 * 2 1 3 23 23 H 1.08995 * 110.37274 * 261.45558 * 5 3 2 24 24 H 1.09001 * 110.36427 * 23.79138 * 5 3 2 25 25 H 1.08997 * 110.37115 * 281.68143 * 7 6 5 26 26 H 1.08995 * 110.37312 * 159.34452 * 7 6 5 27 27 H 0.96696 * 113.99831 * 65.36017 * 9 8 7 28 28 H 0.97006 * 120.00073 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5795 2.0114 -0.8077 5 6 1.7619 2.1150 1.3627 6 8 2.9177 2.9458 1.6069 7 6 4.0496 2.1593 1.1752 8 6 3.5797 1.4724 -0.1262 9 8 3.9738 2.2376 -1.2669 10 6 4.1297 0.0720 -0.2124 11 1 3.4593 -0.7742 -0.1819 12 6 5.4886 -0.1289 -0.3304 13 7 6.3049 0.9016 -0.3672 14 14 6.1704 -1.8648 -0.4366 15 1 5.6022 -2.5478 -1.6264 16 1 7.6494 -1.8091 -0.5577 17 1 5.8017 -2.6173 0.7893 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 0.8606 2.7255 1.3076 24 1 1.6639 1.3618 2.1444 25 1 4.3025 1.4130 1.9282 26 1 4.9057 2.8039 0.9761 27 1 4.9310 2.2895 -1.3941 28 1 7.2609 0.7604 -0.4506 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245319.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -126.032827 kcal Electronic energy + Delta-G solvation = -12276.788191 eV Core-core repulsion = 10098.647986 eV Total energy + Delta-G solvation = -2178.140205 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.63645 -36.77039 -35.29695 -34.13834 -30.37867 -29.00670 -26.80367 -24.63881 -22.68350 -20.95489 -18.47408 -17.33980 -17.16611 -16.53780 -16.16100 -15.78181 -14.77100 -14.54607 -14.02505 -13.65144 -13.29570 -13.18766 -12.86591 -12.71982 -12.35763 -12.29220 -11.77760 -11.56292 -11.29949 -11.14861 -10.68614 -10.47775 -10.01041 -8.24027 -6.37299 1.43087 1.44075 1.51544 2.38428 3.01962 3.28328 3.80427 4.01939 4.24023 4.35644 4.54963 4.59883 4.69147 4.76225 4.89530 5.02988 5.13235 5.15203 5.26206 5.43325 5.50490 5.65166 5.77805 5.88665 6.18236 6.71314 7.33659 7.43266 8.83644 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.039656 B = 0.017258 C = 0.013899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.897214 B = 1622.054148 C = 2014.056846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.108 4.108 4 H 0.065 0.935 5 C 0.053 3.947 6 O -0.412 6.412 7 C 0.049 3.951 8 C 0.210 3.790 9 O -0.599 6.599 10 C -0.558 4.558 11 H 0.086 0.914 12 C 0.022 3.978 13 N -0.923 5.923 14 Si 0.963 3.037 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.268 1.268 18 H 0.063 0.937 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.377 0.623 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -2.594 1.989 7.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.127 4.127 4 H 0.084 0.916 5 C -0.023 4.023 6 O -0.332 6.332 7 C -0.028 4.028 8 C 0.170 3.830 9 O -0.408 6.408 10 C -0.596 4.596 11 H 0.104 0.896 12 C -0.178 4.178 13 N -0.564 5.564 14 Si 0.788 3.212 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.193 1.193 18 H 0.082 0.918 19 H 0.072 0.928 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.123 0.877 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.227 0.773 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.380 -2.263 2.008 7.976 hybrid contribution 1.558 -0.817 -0.168 1.767 sum -5.822 -3.080 1.840 6.839 Atomic orbital electron populations 1.21838 0.94290 1.02243 1.02025 1.21446 0.95771 0.94177 1.01807 1.22434 0.94870 0.97872 0.97514 0.91624 1.23588 0.89322 0.94068 0.95335 1.88938 1.17272 1.41327 1.85635 1.23971 0.88164 0.93365 0.97326 1.20240 0.91047 0.89299 0.82384 1.86116 1.29296 1.75463 1.49968 1.22274 0.92861 0.93380 1.51046 0.89580 1.25857 0.97354 1.01105 0.93467 1.69704 1.04235 1.31669 1.50753 0.85534 0.76950 0.79844 0.78877 1.19791 1.21062 1.19337 0.91842 0.92842 0.91555 0.92678 0.92170 0.87672 0.91598 0.93722 0.91816 0.77300 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.79 71.98 0.70 -3.24 15 2 C -0.09 -3.43 3.82 30.59 0.12 -3.31 15 3 C -0.11 -4.55 2.92 -9.77 -0.03 -4.58 15 4 H 0.07 2.81 8.00 -2.39 -0.02 2.79 15 5 C 0.05 2.01 6.51 72.49 0.47 2.49 15 6 O -0.41 -19.11 11.65 -148.98 -1.74 -20.85 15 7 C 0.05 2.45 6.16 72.48 0.45 2.90 15 8 C 0.21 10.68 1.08 -10.52 -0.01 10.67 15 9 O -0.60 -32.96 12.99 -148.98 -1.94 -34.89 15 10 C -0.56 -29.07 7.31 25.60 0.19 -28.88 15 11 H 0.09 4.26 4.79 -2.91 -0.01 4.25 15 12 C 0.02 1.13 5.27 84.65 0.45 1.58 15 13 N -0.92 -49.82 10.89 21.45 0.23 -49.59 15 14 Si 0.96 41.47 29.54 68.60 2.03 43.50 15 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 16 H -0.29 -12.16 7.11 99.48 0.71 -11.45 15 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 18 H 0.06 1.51 7.63 -2.39 -0.02 1.49 15 19 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 20 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.05 2.19 6.82 -2.39 -0.02 2.17 15 22 H 0.06 2.21 7.32 -2.39 -0.02 2.20 15 23 H 0.11 3.30 8.14 -2.39 -0.02 3.28 15 24 H 0.07 2.29 7.74 -2.39 -0.02 2.27 15 25 H 0.04 2.28 7.86 -2.39 -0.02 2.26 15 26 H 0.06 3.41 8.03 -2.39 -0.02 3.39 15 27 H 0.38 21.08 7.02 -74.06 -0.52 20.56 15 28 H 0.27 13.91 8.31 -92.70 -0.77 13.14 15 Total: -1.00 -57.88 227.20 1.55 -56.33 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.63 Total: 27.89 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 2.33 Total: -22.38 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.23 Total: -49.59 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -3.67 Total: -55.74 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -57.88 1.55 -56.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245319.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.705 kcal (2) G-P(sol) polarization free energy of solvation -57.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds