Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 H 1.09003 * 110.55592 * 307.87964 * 3 2 1 5 5 C 1.54994 * 110.62123 * 184.99780 * 3 2 1 6 6 C 1.54807 * 102.09860 * 204.47570 * 5 3 2 7 7 O 1.42892 * 110.60453 * 262.14898 * 6 5 3 8 8 C 1.50704 * 110.48840 * 139.55499 * 6 5 3 9 9 H 1.07993 * 119.99940 * 3.78421 * 8 6 5 10 10 C 1.37878 * 119.99535 * 183.78412 * 8 6 5 11 11 N 1.31505 * 120.00547 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 119.99543 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47380 * 59.99645 * 12 10 8 14 14 H 1.48494 * 109.47068 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47325 * 299.99743 * 12 10 8 16 16 C 1.54105 * 104.18504 * 20.88235 * 6 5 3 17 17 O 1.43746 * 107.42259 * 1.95340 * 16 6 5 18 18 H 1.08992 * 109.47293 * 299.99937 * 1 2 3 19 19 H 1.09004 * 109.47064 * 59.99801 * 1 2 3 20 20 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47424 * 240.00534 * 2 1 3 22 22 H 1.08997 * 109.47479 * 119.99660 * 2 1 3 23 23 H 1.09007 * 110.90973 * 86.27428 * 5 3 2 24 24 H 1.09003 * 110.93565 * 322.69349 * 5 3 2 25 25 H 0.96697 * 114.00141 * 176.28240 * 7 6 5 26 26 H 0.96997 * 120.00426 * 180.02562 * 11 10 8 27 27 H 1.09002 * 109.88076 * 121.45430 * 16 6 5 28 28 H 1.08996 * 109.87584 * 242.45546 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5766 2.0122 -0.8056 5 6 3.5843 1.4755 -0.1264 6 6 3.9332 2.8410 0.5142 7 8 4.1145 3.8376 -0.4937 8 6 5.1706 2.7231 1.3663 9 1 5.7108 1.7889 1.4076 10 6 5.6130 3.8081 2.0930 11 7 4.9555 4.9459 2.0423 12 14 7.1473 3.6623 3.1486 13 1 8.3065 3.3082 2.2908 14 1 7.4090 4.9590 3.8232 15 1 6.9462 2.6038 4.1707 16 6 2.7071 3.1730 1.3867 17 8 1.7902 2.0713 1.2778 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 3.8898 1.4472 -1.1724 24 1 4.0384 0.6566 0.4317 25 1 4.2788 4.7243 -0.1449 26 1 5.2670 5.7093 2.5532 27 1 3.0142 3.2984 2.4251 28 1 2.2332 4.0865 1.0277 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245367.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -114.484532 kcal Electronic energy + Delta-G solvation = -12022.425721 eV Core-core repulsion = 9844.786288 eV Total energy + Delta-G solvation = -2177.639434 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.66925 -35.05854 -32.91224 -32.18863 -29.77544 -27.18121 -24.74706 -22.93721 -20.29751 -19.67648 -17.01290 -16.00109 -15.00442 -14.55008 -14.02173 -13.84826 -13.12489 -12.93778 -12.42079 -12.18072 -11.64799 -11.39159 -11.05289 -10.97389 -10.64684 -10.53516 -10.41682 -10.21381 -10.05533 -9.13054 -8.81127 -8.50840 -8.15183 -6.25472 -4.32876 3.23924 3.28423 3.31488 4.28807 4.82178 5.03566 5.31426 5.48015 5.68564 5.85344 5.90171 6.11067 6.16295 6.24087 6.40090 6.53288 6.58823 6.65598 6.87421 6.95602 7.24308 7.37724 7.72311 8.01099 8.10560 8.70403 9.33578 9.43102 10.82366 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065382 B = 0.011786 C = 0.011421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.151255 B = 2375.121666 C = 2451.135740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.074 3.926 4 H 0.057 0.943 5 C -0.133 4.133 6 C 0.224 3.776 7 O -0.588 6.588 8 C -0.532 4.532 9 H 0.063 0.937 10 C 0.066 3.934 11 N -0.900 5.900 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.044 3.956 17 O -0.391 6.391 18 H 0.059 0.941 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.381 0.619 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 -5.051 -2.172 6.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.016 3.984 4 H 0.075 0.925 5 C -0.171 4.171 6 C 0.184 3.816 7 O -0.397 6.397 8 C -0.571 4.571 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.540 5.540 12 Si 0.731 3.269 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.032 4.032 17 O -0.311 6.311 18 H 0.078 0.922 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.231 0.769 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.346 -5.436 -2.334 7.340 hybrid contribution 1.098 0.696 0.885 1.573 sum -3.248 -4.740 -1.450 5.925 Atomic orbital electron populations 1.21724 0.96034 1.00704 1.02041 1.21544 0.95923 0.95754 1.02129 1.23080 0.95232 0.92840 0.87214 0.92466 1.23055 0.94289 0.98672 1.01070 1.19887 0.92527 0.84445 0.84739 1.86128 1.94597 1.21930 1.37058 1.21615 1.10633 0.98213 1.26592 0.91867 1.25062 0.97279 0.95117 0.96107 1.69665 1.39804 1.02042 1.42464 0.86459 0.82789 0.77415 0.80235 1.20040 1.21080 1.20016 1.23966 0.89449 0.86915 1.02905 1.88775 1.59688 1.46703 1.35913 0.92173 0.93192 0.93370 0.91384 0.91329 0.91400 0.90573 0.76902 0.92058 0.89311 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.86 37.16 0.37 -1.72 15 2 C -0.12 -1.87 5.69 -26.73 -0.15 -2.02 15 3 C 0.07 1.49 3.29 -25.68 -0.08 1.41 15 4 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 5 C -0.13 -2.95 5.88 -24.73 -0.15 -3.10 15 6 C 0.22 5.77 1.01 -90.24 -0.09 5.68 15 7 O -0.59 -15.62 12.96 -35.23 -0.46 -16.07 15 8 C -0.53 -14.60 8.11 -34.44 -0.28 -14.88 15 9 H 0.06 1.71 7.58 -52.49 -0.40 1.31 15 10 C 0.07 1.78 5.01 -17.82 -0.09 1.69 15 11 N -0.90 -24.31 10.80 55.43 0.60 -23.71 15 12 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 15 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 16 C 0.04 1.12 6.34 37.73 0.24 1.36 15 17 O -0.39 -9.11 11.10 -35.23 -0.39 -9.50 15 18 H 0.06 0.92 8.06 -51.93 -0.42 0.50 15 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.07 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.07 1.44 8.09 -51.93 -0.42 1.02 15 24 H 0.08 1.64 7.63 -51.93 -0.40 1.25 15 25 H 0.38 10.13 7.38 45.56 0.34 10.47 15 26 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 27 H 0.09 2.40 7.09 -51.93 -0.37 2.03 15 28 H 0.04 0.96 7.97 -51.93 -0.41 0.54 15 LS Contribution 233.71 15.07 3.52 3.52 Total: -1.00 -28.03 233.71 -5.31 -33.34 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.33 Total: 8.19 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.24 Total: -11.58 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.60 Total: -23.71 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.85 Total: -25.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.03 -5.31 -33.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245367.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.143 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds