Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 H 1.09003 * 110.55592 * 307.87964 * 3 2 1 5 5 C 1.54994 * 110.62123 * 184.99780 * 3 2 1 6 6 C 1.54807 * 102.09860 * 204.47570 * 5 3 2 7 7 O 1.42892 * 110.60453 * 262.14898 * 6 5 3 8 8 C 1.50704 * 110.48840 * 139.55499 * 6 5 3 9 9 H 1.07993 * 119.99940 * 3.78421 * 8 6 5 10 10 C 1.37878 * 119.99535 * 183.78412 * 8 6 5 11 11 N 1.31505 * 120.00547 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 119.99543 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47380 * 59.99645 * 12 10 8 14 14 H 1.48494 * 109.47068 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47325 * 299.99743 * 12 10 8 16 16 C 1.54105 * 104.18504 * 20.88235 * 6 5 3 17 17 O 1.43746 * 107.42259 * 1.95340 * 16 6 5 18 18 H 1.08992 * 109.47293 * 299.99937 * 1 2 3 19 19 H 1.09004 * 109.47064 * 59.99801 * 1 2 3 20 20 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47424 * 240.00534 * 2 1 3 22 22 H 1.08997 * 109.47479 * 119.99660 * 2 1 3 23 23 H 1.09007 * 110.90973 * 86.27428 * 5 3 2 24 24 H 1.09003 * 110.93565 * 322.69349 * 5 3 2 25 25 H 0.96697 * 114.00141 * 176.28240 * 7 6 5 26 26 H 0.96997 * 120.00426 * 180.02562 * 11 10 8 27 27 H 1.09002 * 109.88076 * 121.45430 * 16 6 5 28 28 H 1.08996 * 109.87584 * 242.45546 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5766 2.0122 -0.8056 5 6 3.5843 1.4755 -0.1264 6 6 3.9332 2.8410 0.5142 7 8 4.1145 3.8376 -0.4937 8 6 5.1706 2.7231 1.3663 9 1 5.7108 1.7889 1.4076 10 6 5.6130 3.8081 2.0930 11 7 4.9555 4.9459 2.0423 12 14 7.1473 3.6623 3.1486 13 1 8.3065 3.3082 2.2908 14 1 7.4090 4.9590 3.8232 15 1 6.9462 2.6038 4.1707 16 6 2.7071 3.1730 1.3867 17 8 1.7902 2.0713 1.2778 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 3.8898 1.4472 -1.1724 24 1 4.0384 0.6566 0.4317 25 1 4.2788 4.7243 -0.1449 26 1 5.2670 5.7093 2.5532 27 1 3.0142 3.2984 2.4251 28 1 2.2332 4.0865 1.0277 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245367.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -134.409108 kcal Electronic energy + Delta-G solvation = -12023.289716 eV Core-core repulsion = 9844.786288 eV Total energy + Delta-G solvation = -2178.503428 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.51109 -36.99727 -34.41123 -34.21948 -31.61927 -28.92734 -26.78230 -24.46235 -21.84171 -21.62135 -19.05074 -17.82434 -16.96361 -16.30964 -15.77602 -15.70209 -14.77970 -14.49026 -14.13263 -13.93765 -13.38343 -13.19015 -12.83418 -12.55479 -12.41179 -12.32987 -12.10049 -11.80074 -11.66958 -11.02461 -10.75449 -10.47773 -10.18745 -8.28865 -6.44671 1.41532 1.41997 1.50467 2.36095 2.95023 3.13604 3.85123 3.92378 4.14524 4.22118 4.44551 4.48570 4.58277 4.74175 4.91274 5.03893 5.10012 5.12835 5.24297 5.29591 5.39265 5.48123 5.64989 6.05197 6.15415 6.62271 7.24563 7.32722 8.77711 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065382 B = 0.011786 C = 0.011421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.151255 B = 2375.121666 C = 2451.135740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.072 3.928 4 H 0.060 0.940 5 C -0.130 4.130 6 C 0.206 3.794 7 O -0.593 6.593 8 C -0.561 4.561 9 H 0.059 0.941 10 C 0.025 3.975 11 N -0.916 5.916 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.271 1.271 16 C 0.057 3.943 17 O -0.399 6.399 18 H 0.042 0.958 19 H 0.057 0.943 20 H 0.075 0.925 21 H 0.095 0.905 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.376 0.624 26 H 0.273 0.727 27 H 0.064 0.936 28 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -6.165 -2.365 7.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.015 3.985 4 H 0.078 0.922 5 C -0.168 4.168 6 C 0.167 3.833 7 O -0.402 6.402 8 C -0.599 4.599 9 H 0.078 0.922 10 C -0.175 4.175 11 N -0.556 5.556 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.196 1.196 16 C -0.020 4.020 17 O -0.319 6.319 18 H 0.061 0.939 19 H 0.076 0.924 20 H 0.094 0.906 21 H 0.113 0.887 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.226 0.774 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.344 -6.559 -2.536 8.266 hybrid contribution 1.069 1.049 0.914 1.755 sum -3.275 -5.510 -1.622 6.612 Atomic orbital electron populations 1.21704 0.94430 1.02439 1.01636 1.21575 0.97312 0.92660 1.03314 1.23331 0.94034 0.95304 0.85808 0.92207 1.23055 0.95833 0.96623 1.01276 1.20150 0.92273 0.85815 0.85101 1.86118 1.94635 1.21913 1.37515 1.21878 1.11674 0.98509 1.27857 0.92231 1.25803 0.99972 0.94758 0.97014 1.69748 1.40752 1.02423 1.42638 0.85481 0.79219 0.77587 0.78594 1.19698 1.20391 1.19631 1.23636 0.89706 0.87357 1.01300 1.88759 1.59112 1.46181 1.37837 0.93868 0.92352 0.90598 0.88675 0.91654 0.90519 0.90213 0.77426 0.91812 0.91734 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.86 71.98 0.71 -2.97 15 2 C -0.11 -3.28 5.69 30.59 0.17 -3.10 15 3 C 0.07 2.82 3.29 31.28 0.10 2.92 15 4 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 5 C -0.13 -5.65 5.88 31.89 0.19 -5.46 15 6 C 0.21 10.67 1.01 -10.55 -0.01 10.66 15 7 O -0.59 -31.71 12.96 -148.98 -1.93 -33.64 15 8 C -0.56 -30.85 8.11 25.60 0.21 -30.65 15 9 H 0.06 3.22 7.58 -2.91 -0.02 3.20 15 10 C 0.02 1.33 5.01 84.66 0.42 1.76 15 11 N -0.92 -49.71 10.80 21.45 0.23 -49.48 15 12 Si 0.97 42.38 29.54 68.60 2.03 44.40 15 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 14 H -0.28 -11.84 7.11 99.48 0.71 -11.14 15 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 16 C 0.06 2.93 6.34 72.36 0.46 3.39 15 17 O -0.40 -18.45 11.10 -148.98 -1.65 -20.10 15 18 H 0.04 1.23 8.06 -2.39 -0.02 1.21 15 19 H 0.06 1.38 8.14 -2.38 -0.02 1.36 15 20 H 0.08 1.52 8.14 -2.38 -0.02 1.50 15 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.08 3.14 8.09 -2.38 -0.02 3.12 15 24 H 0.08 3.35 7.63 -2.39 -0.02 3.34 15 25 H 0.38 20.37 7.38 -74.06 -0.55 19.83 15 26 H 0.27 14.02 8.31 -92.71 -0.77 13.25 15 27 H 0.06 3.57 7.09 -2.39 -0.02 3.56 15 28 H 0.03 1.48 7.97 -2.39 -0.02 1.46 15 Total: -1.00 -58.53 233.71 1.52 -57.01 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.59 Total: 25.25 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 2.25 Total: -23.45 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.23 Total: -49.48 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -3.58 Total: -53.73 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -58.53 1.52 -57.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245367.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.398 kcal (2) G-P(sol) polarization free energy of solvation -58.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds