Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47278 * 2 1 4 4 H 1.09004 * 110.41880 * 52.69395 * 3 2 1 5 5 C 1.54487 * 110.37371 * 175.00459 * 3 2 1 6 6 C 1.54503 * 104.06411 * 142.81080 * 5 3 2 7 7 O 1.42896 * 110.51323 * 241.21439 * 6 5 3 8 8 C 1.50705 * 110.51114 * 118.64121 * 6 5 3 9 9 H 1.07996 * 120.00109 * 0.02562 * 8 6 5 10 10 C 1.37878 * 119.99803 * 179.97438 * 8 6 5 11 11 N 1.31514 * 120.00309 * 0.02562 * 10 8 6 12 12 Si 1.86807 * 119.99797 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.46944 * 59.99838 * 12 10 8 14 14 H 1.48500 * 109.46863 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46772 * 300.00019 * 12 10 8 16 16 C 1.54483 * 104.06614 * 0.02562 * 6 5 3 17 17 O 1.44421 * 110.37448 * 290.38195 * 3 2 1 18 18 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46657 * 299.99857 * 1 2 3 20 20 H 1.08997 * 109.47511 * 59.99467 * 1 2 3 21 21 H 1.09006 * 109.47166 * 240.00124 * 2 1 3 22 22 H 1.08997 * 109.47511 * 120.00533 * 2 1 3 23 23 H 1.09002 * 110.50613 * 261.45649 * 5 3 2 24 24 H 1.08992 * 110.50982 * 24.16342 * 5 3 2 25 25 H 0.96703 * 114.00625 * 179.97438 * 7 6 5 26 26 H 0.96999 * 119.99987 * 179.97438 * 11 10 8 27 27 H 1.08999 * 110.37607 * 94.84811 * 16 6 5 28 28 H 1.09000 * 110.37565 * 217.19135 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5831 2.0074 0.8126 5 6 3.5795 1.4686 0.1261 6 6 4.0107 2.6419 -0.7819 7 8 4.8545 2.1751 -1.8365 8 6 4.7140 3.7030 0.0247 9 1 4.8509 3.5710 1.0878 10 6 5.1835 4.8418 -0.5947 11 7 5.0173 5.0023 -1.8894 12 14 6.0559 6.1568 0.4050 13 1 7.2621 5.5731 1.0450 14 1 6.4596 7.2717 -0.4889 15 1 5.1388 6.6709 1.4537 16 6 2.6808 3.1864 -1.3488 17 8 1.7631 2.0737 -1.2691 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 3.8749 1.6559 1.1585 24 1 4.0078 0.5320 -0.2308 25 1 5.1545 2.8707 -2.4374 26 1 5.3473 5.8036 -2.3251 27 1 2.3225 4.0187 -0.7429 28 1 2.8094 3.4982 -2.3853 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = -114.524057 kcal Electronic energy + Delta-G solvation = -12023.338359 eV Core-core repulsion = 9845.697212 eV Total energy + Delta-G solvation = -2177.641148 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.66894 -35.02262 -32.87864 -32.12344 -29.87261 -27.12514 -24.71942 -22.91856 -20.38082 -19.58815 -17.18577 -15.57362 -15.03239 -14.67297 -14.25084 -13.98053 -13.05603 -12.89676 -12.32770 -11.96764 -11.65018 -11.28968 -11.05614 -10.94597 -10.64667 -10.58433 -10.46238 -10.27597 -9.91172 -9.38574 -8.77601 -8.58946 -8.01888 -6.27425 -4.35128 3.21713 3.26780 3.29418 4.26325 4.88932 4.99492 5.30971 5.48546 5.69735 5.89438 5.96851 6.03227 6.20918 6.24016 6.43995 6.52546 6.60879 6.69205 6.85698 7.00390 7.17281 7.41545 7.75008 7.78321 8.13599 8.68759 9.33960 9.53289 10.80637 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.069014 B = 0.011622 C = 0.011273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.617308 B = 2408.545972 C = 2483.204688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.077 3.923 4 H 0.057 0.943 5 C -0.136 4.136 6 C 0.226 3.774 7 O -0.586 6.586 8 C -0.538 4.538 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.900 5.900 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.040 3.960 17 O -0.391 6.391 18 H 0.047 0.953 19 H 0.049 0.951 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.382 0.618 26 H 0.270 0.730 27 H 0.052 0.948 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 -4.211 3.041 6.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.019 3.981 4 H 0.075 0.925 5 C -0.173 4.173 6 C 0.186 3.814 7 O -0.396 6.396 8 C -0.576 4.576 9 H 0.081 0.919 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.731 3.269 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.201 1.201 16 C -0.037 4.037 17 O -0.311 6.311 18 H 0.066 0.934 19 H 0.068 0.932 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.233 0.767 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.698 -4.716 3.025 7.312 hybrid contribution 0.756 1.535 0.357 1.748 sum -3.942 -3.181 3.382 6.091 Atomic orbital electron populations 1.21722 0.96030 1.00690 1.02038 1.21572 0.95891 0.95781 1.02107 1.22871 0.94945 0.92905 0.87421 0.92542 1.22921 0.94214 0.99961 1.00244 1.19861 0.87266 0.89451 0.84800 1.86124 1.69403 1.40348 1.43745 1.21690 1.37918 1.02797 0.95178 0.91852 1.25074 0.95038 0.98091 0.95197 1.69585 1.46569 1.28915 1.08949 0.86456 0.80020 0.80561 0.79838 1.20001 1.21042 1.20053 1.24195 0.89999 0.87650 1.01820 1.88972 1.60116 1.45381 1.36670 0.93393 0.93182 0.92168 0.91382 0.91430 0.91063 0.91573 0.76656 0.91971 0.92961 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.85 37.16 0.37 -1.73 15 2 C -0.12 -1.89 5.56 -26.73 -0.15 -2.04 15 3 C 0.08 1.54 3.25 -25.95 -0.08 1.46 15 4 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 5 C -0.14 -3.02 6.07 -25.16 -0.15 -3.18 15 6 C 0.23 5.87 1.08 -90.20 -0.10 5.77 15 7 O -0.59 -16.02 12.99 -35.23 -0.46 -16.48 15 8 C -0.54 -14.60 8.12 -34.44 -0.28 -14.88 15 9 H 0.06 1.69 7.38 -52.49 -0.39 1.30 15 10 C 0.07 1.81 5.27 -17.82 -0.09 1.72 15 11 N -0.90 -24.25 10.89 55.43 0.60 -23.64 15 12 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 15 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 14 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 16 C 0.04 1.00 6.17 37.94 0.23 1.23 15 17 O -0.39 -9.10 11.13 -35.23 -0.39 -9.49 15 18 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.06 0.92 8.01 -51.93 -0.42 0.51 15 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 1.51 7.46 -51.93 -0.39 1.12 15 24 H 0.07 1.45 7.73 -51.93 -0.40 1.05 15 25 H 0.38 10.47 7.01 45.56 0.32 10.79 15 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 27 H 0.05 1.33 7.86 -51.93 -0.41 0.92 15 28 H 0.08 2.19 8.03 -51.93 -0.42 1.78 15 LS Contribution 233.73 15.07 3.52 3.52 Total: -1.00 -28.10 233.73 -5.35 -33.44 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.35 Total: 8.69 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.26 Total: -11.65 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.60 Total: -23.64 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.85 Total: -25.97 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.10 -5.35 -33.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.079 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds