Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 H 1.08999 * 110.41504 * 307.30705 * 3 2 1 5 5 C 1.54479 * 110.37042 * 184.99874 * 3 2 1 6 6 C 1.54507 * 104.05804 * 217.18740 * 5 3 2 7 7 O 1.42902 * 110.50867 * 118.78613 * 6 5 3 8 8 C 1.50701 * 110.51224 * 241.35624 * 6 5 3 9 9 H 1.08003 * 119.99664 * 359.34792 * 8 6 5 10 10 C 1.37881 * 120.00155 * 179.34804 * 8 6 5 11 11 N 1.31508 * 120.00013 * 354.17355 * 10 8 6 12 12 Si 1.86800 * 119.99867 * 174.17302 * 10 8 6 13 13 H 1.48503 * 109.46883 * 265.19965 * 12 10 8 14 14 H 1.48501 * 109.47233 * 25.19935 * 12 10 8 15 15 H 1.48501 * 109.47161 * 145.20308 * 12 10 8 16 16 C 1.54479 * 104.06578 * 0.02562 * 6 5 3 17 17 O 1.44419 * 110.37239 * 69.61423 * 3 2 1 18 18 H 1.09006 * 109.47095 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.46900 * 299.99931 * 1 2 3 20 20 H 1.08993 * 109.46794 * 60.00324 * 1 2 3 21 21 H 1.09004 * 109.47342 * 239.99906 * 2 1 3 22 22 H 1.09006 * 109.46961 * 119.99856 * 2 1 3 23 23 H 1.09010 * 110.50930 * 98.54641 * 5 3 2 24 24 H 1.08994 * 110.51226 * 335.83521 * 5 3 2 25 25 H 0.96703 * 113.99510 * 188.90177 * 7 6 5 26 26 H 0.97003 * 120.00182 * 179.97438 * 11 10 8 27 27 H 1.09000 * 110.37157 * 142.80822 * 16 6 5 28 28 H 1.09001 * 110.36927 * 265.14219 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5831 2.0073 -0.8125 5 6 3.5795 1.4685 -0.1262 6 6 4.0107 2.6419 0.7818 7 8 4.8544 2.1750 1.8364 8 6 4.7139 3.7030 -0.0247 9 1 4.8599 3.5664 -1.0861 10 6 5.1711 4.8482 0.5922 11 7 4.8940 5.0681 1.8589 12 14 6.1840 6.0873 -0.3711 13 1 7.6288 5.8168 -0.1597 14 1 5.8648 5.9706 -1.8167 15 1 5.8636 7.4596 0.0974 16 6 2.6808 3.1855 1.3497 17 8 1.7630 2.0737 1.2691 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5139 -0.8900 22 1 1.8934 -0.5138 0.8901 23 1 3.8749 1.6559 -1.1586 24 1 4.0078 0.5320 0.2307 25 1 5.0441 2.8403 2.5121 26 1 5.2159 5.8735 2.2931 27 1 2.8100 3.4971 2.3862 28 1 2.3219 4.0179 0.7443 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245369.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = -134.282333 kcal Electronic energy + Delta-G solvation = -12024.215734 eV Core-core repulsion = 9845.717804 eV Total energy + Delta-G solvation = -2178.497931 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.51096 -36.96228 -34.34571 -34.23317 -31.71128 -28.83762 -26.73844 -24.45936 -21.95440 -21.49842 -19.16981 -17.44509 -16.93723 -16.43269 -16.07908 -15.86779 -14.48728 -14.41001 -14.11443 -13.79052 -13.39678 -13.14851 -12.78623 -12.61326 -12.52501 -12.27393 -12.02086 -11.80997 -11.68885 -11.15653 -10.70474 -10.54068 -10.07236 -8.28521 -6.42980 1.39972 1.42315 1.52138 2.36032 2.97181 3.18754 3.77729 4.03111 4.16943 4.25162 4.42213 4.49948 4.61587 4.76616 4.94970 5.03028 5.06146 5.11324 5.22450 5.29072 5.42765 5.48984 5.70400 5.92017 6.17148 6.65175 7.27978 7.33906 8.78960 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.070112 B = 0.011571 C = 0.011262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.266556 B = 2419.330086 C = 2485.655974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.074 3.926 4 H 0.066 0.934 5 C -0.133 4.133 6 C 0.207 3.793 7 O -0.593 6.593 8 C -0.562 4.562 9 H 0.061 0.939 10 C 0.027 3.973 11 N -0.915 5.915 12 Si 0.966 3.034 13 H -0.277 1.277 14 H -0.268 1.268 15 H -0.279 1.279 16 C 0.054 3.946 17 O -0.401 6.401 18 H 0.074 0.926 19 H 0.042 0.958 20 H 0.060 0.940 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.373 0.627 26 H 0.271 0.729 27 H 0.068 0.932 28 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -4.869 -3.970 7.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.016 3.984 4 H 0.084 0.916 5 C -0.171 4.171 6 C 0.167 3.833 7 O -0.401 6.401 8 C -0.600 4.600 9 H 0.079 0.921 10 C -0.174 4.174 11 N -0.555 5.555 12 Si 0.791 3.209 13 H -0.202 1.202 14 H -0.192 1.192 15 H -0.205 1.205 16 C -0.023 4.023 17 O -0.321 6.321 18 H 0.093 0.907 19 H 0.061 0.939 20 H 0.079 0.921 21 H 0.113 0.887 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.222 0.778 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.865 -5.367 -4.025 8.287 hybrid contribution 0.855 1.587 0.085 1.804 sum -4.010 -3.780 -3.940 6.774 Atomic orbital electron populations 1.21699 0.94305 1.02391 1.01731 1.21602 0.97387 0.92890 1.03036 1.23143 0.93624 0.95326 0.86293 0.91599 1.22944 0.95799 0.98501 0.99872 1.20189 0.87110 0.91000 0.84992 1.86160 1.71751 1.43507 1.38644 1.21937 1.39129 1.03404 0.95510 0.92063 1.25803 0.96023 0.99369 0.96193 1.69802 1.45387 1.28357 1.11910 0.85426 0.78743 0.77768 0.78975 1.20241 1.19212 1.20478 1.23877 0.90053 0.87895 1.00452 1.88948 1.59646 1.44976 1.38543 0.90729 0.93873 0.92121 0.88744 0.92197 0.90236 0.91411 0.77798 0.91918 0.91328 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.85 71.98 0.71 -2.96 15 2 C -0.11 -3.34 5.56 30.60 0.17 -3.17 15 3 C 0.07 2.84 3.25 31.10 0.10 2.94 15 4 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 5 C -0.13 -5.80 6.07 31.61 0.19 -5.61 15 6 C 0.21 10.69 1.06 -10.52 -0.01 10.68 15 7 O -0.59 -32.32 12.97 -148.98 -1.93 -34.25 15 8 C -0.56 -30.54 8.12 25.60 0.21 -30.34 15 9 H 0.06 3.26 7.39 -2.91 -0.02 3.24 15 10 C 0.03 1.42 5.29 84.66 0.45 1.87 15 11 N -0.92 -49.52 10.97 21.45 0.24 -49.29 15 12 Si 0.97 42.11 29.54 68.60 2.03 44.14 15 13 H -0.28 -11.93 7.11 99.48 0.71 -11.23 15 14 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 15 H -0.28 -11.85 7.11 99.48 0.71 -11.15 15 16 C 0.05 2.73 5.99 72.48 0.43 3.17 15 17 O -0.40 -18.39 11.13 -148.98 -1.66 -20.05 15 18 H 0.07 1.51 8.14 -2.38 -0.02 1.49 15 19 H 0.04 1.23 8.01 -2.39 -0.02 1.22 15 20 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.09 2.33 8.14 -2.38 -0.02 2.31 15 22 H 0.06 1.89 8.14 -2.38 -0.02 1.87 15 23 H 0.08 3.27 7.46 -2.38 -0.02 3.25 15 24 H 0.07 2.88 7.73 -2.39 -0.02 2.86 15 25 H 0.37 20.42 7.38 -74.06 -0.55 19.87 15 26 H 0.27 13.89 8.31 -92.71 -0.77 13.12 15 27 H 0.07 3.63 7.84 -2.39 -0.02 3.61 15 28 H 0.04 2.16 7.86 -2.39 -0.02 2.14 15 Total: -1.00 -58.63 233.81 1.52 -57.11 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.59 Total: 25.75 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 2.25 Total: -23.41 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.24 Total: -49.29 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -3.59 Total: -54.30 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -58.63 1.52 -57.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245369.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.170 kcal (2) G-P(sol) polarization free energy of solvation -58.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds