Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46879 * 2 1 4 4 H 1.08999 * 110.54875 * 56.42186 * 3 2 1 5 5 C 1.55222 * 110.77925 * 179.28995 * 3 2 1 6 6 C 1.54813 * 101.98864 * 155.50353 * 5 3 2 7 7 O 1.42896 * 110.48963 * 98.00544 * 6 5 3 8 8 C 1.50695 * 110.48400 * 220.51910 * 6 5 3 9 9 H 1.08004 * 120.00546 * 358.43085 * 8 6 5 10 10 C 1.37885 * 119.99721 * 178.15336 * 8 6 5 11 11 N 1.31514 * 120.00035 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99853 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46793 * 120.00131 * 12 10 8 15 15 H 1.48500 * 109.47000 * 240.00224 * 12 10 8 16 16 C 1.54106 * 104.30210 * 339.25982 * 6 5 3 17 17 O 1.43739 * 107.29425 * 357.90639 * 16 6 5 18 18 H 1.09003 * 109.46574 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47563 * 299.99826 * 1 2 3 20 20 H 1.09004 * 109.47066 * 60.00052 * 1 2 3 21 21 H 1.09001 * 109.47120 * 240.00270 * 2 1 3 22 22 H 1.08997 * 109.47368 * 119.99703 * 2 1 3 23 23 H 1.08996 * 110.89105 * 37.36281 * 5 3 2 24 24 H 1.09000 * 111.02089 * 273.69394 * 5 3 2 25 25 H 0.96702 * 114.00241 * 181.84916 * 7 6 5 26 26 H 0.97000 * 119.99706 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.87597 * 117.33187 * 16 6 5 28 28 H 1.09000 * 109.87687 * 238.33140 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9914 0.8503 5 6 3.5917 1.4781 0.0180 6 6 3.8890 2.8605 -0.6122 7 8 4.1413 3.8306 0.4062 8 6 5.0617 2.7694 -1.5543 9 1 5.5780 1.8298 -1.6847 10 6 5.4719 3.8844 -2.2542 11 7 4.8401 5.0274 -2.0992 12 14 6.9260 3.7717 -3.4214 13 1 7.4591 2.3857 -3.4157 14 1 6.4868 4.1269 -4.7948 15 1 7.9875 4.7126 -2.9821 16 6 2.6025 3.2114 -1.3847 17 8 1.7004 2.1019 -1.2388 18 1 -0.3632 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 4.0059 0.6753 -0.5919 24 1 3.9722 1.4257 1.0381 25 1 4.3058 4.7217 0.0685 26 1 5.1290 5.8118 -2.5913 27 1 2.1531 4.1120 -0.9664 28 1 2.8339 3.3679 -2.4383 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -114.608022 kcal Electronic energy + Delta-G solvation = -12024.604915 eV Core-core repulsion = 9846.960126 eV Total energy + Delta-G solvation = -2177.644789 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.67682 -35.06916 -32.89503 -32.16770 -29.77924 -27.19044 -24.74969 -22.95807 -20.28318 -19.66740 -17.03467 -15.99797 -15.01643 -14.57798 -14.01576 -13.84827 -13.07453 -12.96891 -12.40468 -12.17388 -11.66228 -11.39978 -11.05678 -11.00571 -10.63592 -10.47358 -10.42166 -10.21813 -10.05128 -9.14841 -8.80658 -8.52258 -8.14522 -6.26466 -4.33523 3.20565 3.28949 3.33635 4.28291 4.81870 5.02814 5.31471 5.47908 5.69775 5.86183 5.90516 6.10866 6.16006 6.24218 6.40437 6.54229 6.59791 6.65898 6.87417 6.95452 7.24584 7.36083 7.72113 8.01400 8.09396 8.70178 9.33817 9.44926 10.81466 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065244 B = 0.011799 C = 0.011422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.054514 B = 2372.556509 C = 2450.884216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.074 3.926 4 H 0.057 0.943 5 C -0.133 4.133 6 C 0.223 3.777 7 O -0.589 6.589 8 C -0.531 4.531 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.900 5.900 12 Si 0.904 3.096 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.044 3.956 17 O -0.390 6.390 18 H 0.047 0.953 19 H 0.049 0.951 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.382 0.618 26 H 0.269 0.731 27 H 0.038 0.962 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 -5.165 2.222 6.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.016 3.984 4 H 0.075 0.925 5 C -0.171 4.171 6 C 0.183 3.817 7 O -0.398 6.398 8 C -0.569 4.569 9 H 0.083 0.917 10 C -0.136 4.136 11 N -0.541 5.541 12 Si 0.731 3.269 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.033 4.033 17 O -0.310 6.310 18 H 0.066 0.934 19 H 0.068 0.932 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.233 0.767 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.188 -5.557 2.397 7.360 hybrid contribution 1.039 0.745 -0.944 1.589 sum -3.149 -4.812 1.453 5.932 Atomic orbital electron populations 1.21707 0.95990 1.00651 1.02106 1.21539 0.96005 0.95683 1.02071 1.23080 0.94699 0.92540 0.88034 0.92524 1.23096 0.94279 0.98581 1.01131 1.19900 0.92070 0.84719 0.84988 1.86119 1.93739 1.22999 1.36958 1.21704 1.14735 0.96635 1.23826 0.91738 1.25075 0.96927 0.95196 0.96445 1.69649 1.40754 1.00647 1.43023 0.86341 0.81940 0.78333 0.80257 1.19612 1.20774 1.20769 1.23974 0.89841 0.86826 1.02629 1.88722 1.57547 1.45094 1.39644 0.93413 0.93209 0.92096 0.91395 0.91416 0.90605 0.91366 0.76692 0.92139 0.94395 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.83 37.16 0.37 -1.73 15 2 C -0.12 -1.86 5.72 -26.73 -0.15 -2.01 15 3 C 0.07 1.50 3.32 -25.55 -0.08 1.41 15 4 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 5 C -0.13 -2.96 5.90 -24.60 -0.15 -3.10 15 6 C 0.22 5.76 1.01 -90.24 -0.09 5.67 15 7 O -0.59 -15.69 12.95 -35.23 -0.46 -16.14 15 8 C -0.53 -14.55 8.10 -34.44 -0.28 -14.83 15 9 H 0.06 1.75 7.56 -52.48 -0.40 1.36 15 10 C 0.07 1.75 5.02 -17.82 -0.09 1.66 15 11 N -0.90 -24.32 10.81 55.43 0.60 -23.73 15 12 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 15 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 15 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 16 C 0.04 1.11 6.42 37.74 0.24 1.35 15 17 O -0.39 -9.06 10.89 -35.23 -0.38 -9.44 15 18 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.06 0.94 7.92 -51.93 -0.41 0.53 15 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.08 1.64 7.62 -51.93 -0.40 1.24 15 24 H 0.07 1.45 8.08 -51.93 -0.42 1.03 15 25 H 0.38 10.25 7.20 45.56 0.33 10.58 15 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 27 H 0.04 0.96 7.97 -51.93 -0.41 0.55 15 28 H 0.09 2.36 7.21 -51.93 -0.37 1.99 15 LS Contribution 233.43 15.07 3.52 3.52 Total: -1.00 -28.03 233.43 -5.31 -33.34 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.33 Total: 8.23 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.23 Total: -11.57 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.60 Total: -23.73 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.84 Total: -25.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.03 -5.31 -33.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.264 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds