Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46879 * 2 1 4 4 H 1.08999 * 110.54875 * 56.42186 * 3 2 1 5 5 C 1.55222 * 110.77925 * 179.28995 * 3 2 1 6 6 C 1.54813 * 101.98864 * 155.50353 * 5 3 2 7 7 O 1.42896 * 110.48963 * 98.00544 * 6 5 3 8 8 C 1.50695 * 110.48400 * 220.51910 * 6 5 3 9 9 H 1.08004 * 120.00546 * 358.43085 * 8 6 5 10 10 C 1.37885 * 119.99721 * 178.15336 * 8 6 5 11 11 N 1.31514 * 120.00035 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99853 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46793 * 120.00131 * 12 10 8 15 15 H 1.48500 * 109.47000 * 240.00224 * 12 10 8 16 16 C 1.54106 * 104.30210 * 339.25982 * 6 5 3 17 17 O 1.43739 * 107.29425 * 357.90639 * 16 6 5 18 18 H 1.09003 * 109.46574 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47563 * 299.99826 * 1 2 3 20 20 H 1.09004 * 109.47066 * 60.00052 * 1 2 3 21 21 H 1.09001 * 109.47120 * 240.00270 * 2 1 3 22 22 H 1.08997 * 109.47368 * 119.99703 * 2 1 3 23 23 H 1.08996 * 110.89105 * 37.36281 * 5 3 2 24 24 H 1.09000 * 111.02089 * 273.69394 * 5 3 2 25 25 H 0.96702 * 114.00241 * 181.84916 * 7 6 5 26 26 H 0.97000 * 119.99706 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.87597 * 117.33187 * 16 6 5 28 28 H 1.09000 * 109.87687 * 238.33140 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9914 0.8503 5 6 3.5917 1.4781 0.0180 6 6 3.8890 2.8605 -0.6122 7 8 4.1413 3.8306 0.4062 8 6 5.0617 2.7694 -1.5543 9 1 5.5780 1.8298 -1.6847 10 6 5.4719 3.8844 -2.2542 11 7 4.8401 5.0274 -2.0992 12 14 6.9260 3.7717 -3.4214 13 1 7.4591 2.3857 -3.4157 14 1 6.4868 4.1269 -4.7948 15 1 7.9875 4.7126 -2.9821 16 6 2.6025 3.2114 -1.3847 17 8 1.7004 2.1019 -1.2388 18 1 -0.3632 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 4.0059 0.6753 -0.5919 24 1 3.9722 1.4257 1.0381 25 1 4.3058 4.7217 0.0685 26 1 5.1290 5.8118 -2.5913 27 1 2.1531 4.1120 -0.9664 28 1 2.8339 3.3679 -2.4383 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -134.483673 kcal Electronic energy + Delta-G solvation = -12025.466788 eV Core-core repulsion = 9846.960126 eV Total energy + Delta-G solvation = -2178.506661 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.51742 -37.01146 -34.38763 -34.20485 -31.62728 -28.93672 -26.78522 -24.48453 -21.82626 -21.61339 -19.07437 -17.81800 -16.97462 -16.34116 -15.77159 -15.70273 -14.75804 -14.50950 -14.10485 -13.92585 -13.38682 -13.22206 -12.86437 -12.55636 -12.39919 -12.29247 -12.11159 -11.78803 -11.66793 -11.04605 -10.74916 -10.48665 -10.18268 -8.29789 -6.45260 1.38874 1.41512 1.53041 2.35651 2.94112 3.13319 3.85964 3.91701 4.14375 4.22076 4.45098 4.49278 4.57860 4.73985 4.90771 5.04123 5.09682 5.13165 5.24134 5.29960 5.38954 5.48650 5.65131 6.04011 6.15801 6.62029 7.24904 7.33620 8.77263 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065244 B = 0.011799 C = 0.011422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.054514 B = 2372.556509 C = 2450.884216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.072 3.928 4 H 0.059 0.941 5 C -0.130 4.130 6 C 0.205 3.795 7 O -0.594 6.594 8 C -0.559 4.559 9 H 0.060 0.940 10 C 0.024 3.976 11 N -0.917 5.917 12 Si 0.967 3.033 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.057 3.943 17 O -0.397 6.397 18 H 0.075 0.925 19 H 0.057 0.943 20 H 0.042 0.958 21 H 0.065 0.935 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.377 0.623 26 H 0.273 0.727 27 H 0.028 0.972 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 -6.278 2.368 7.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C 0.015 3.985 4 H 0.077 0.923 5 C -0.168 4.168 6 C 0.166 3.834 7 O -0.403 6.403 8 C -0.597 4.597 9 H 0.078 0.922 10 C -0.176 4.176 11 N -0.557 5.557 12 Si 0.792 3.208 13 H -0.194 1.194 14 H -0.203 1.203 15 H -0.202 1.202 16 C -0.021 4.021 17 O -0.317 6.317 18 H 0.094 0.906 19 H 0.076 0.924 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.114 0.886 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.227 0.773 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.179 -6.680 2.554 8.283 hybrid contribution 1.010 1.099 -0.958 1.774 sum -3.169 -5.581 1.595 6.613 Atomic orbital electron populations 1.21687 0.94476 1.02381 1.01625 1.21573 0.97313 0.92591 1.03332 1.23330 0.93427 0.94959 0.86751 0.92298 1.23096 0.95916 0.96475 1.01307 1.20166 0.91839 0.86148 0.85268 1.86109 1.93801 1.22945 1.37449 1.21942 1.15776 0.96863 1.25105 0.92217 1.25817 0.99280 0.94826 0.97701 1.69724 1.41595 1.01066 1.43348 0.85360 0.78800 0.78342 0.78256 1.19358 1.20261 1.20195 1.23645 0.90122 0.87301 1.00984 1.88708 1.57043 1.44579 1.41405 0.90609 0.92428 0.93880 0.91638 0.88644 0.90247 0.90519 0.77259 0.91783 0.95339 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.83 71.98 0.71 -2.99 15 2 C -0.11 -3.25 5.72 30.60 0.18 -3.08 15 3 C 0.07 2.82 3.32 31.36 0.10 2.92 15 4 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 5 C -0.13 -5.65 5.90 31.98 0.19 -5.47 15 6 C 0.21 10.64 1.01 -10.55 -0.01 10.63 15 7 O -0.59 -31.88 12.95 -148.98 -1.93 -33.81 15 8 C -0.56 -30.72 8.10 25.60 0.21 -30.51 15 9 H 0.06 3.25 7.56 -2.91 -0.02 3.23 15 10 C 0.02 1.28 5.02 84.66 0.43 1.70 15 11 N -0.92 -49.76 10.81 21.45 0.23 -49.53 15 12 Si 0.97 42.40 29.54 68.60 2.03 44.43 15 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 14 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 16 C 0.06 2.90 6.42 72.36 0.46 3.37 15 17 O -0.40 -18.31 10.89 -148.98 -1.62 -19.93 15 18 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 19 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.04 1.24 7.92 -2.39 -0.02 1.23 15 21 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.10 2.31 8.14 -2.39 -0.02 2.29 15 23 H 0.08 3.34 7.62 -2.39 -0.02 3.33 15 24 H 0.08 3.15 8.08 -2.39 -0.02 3.13 15 25 H 0.38 20.59 7.20 -74.06 -0.53 20.06 15 26 H 0.27 13.94 8.31 -92.71 -0.77 13.17 15 27 H 0.03 1.48 7.97 -2.39 -0.02 1.46 15 28 H 0.06 3.54 7.21 -2.39 -0.02 3.52 15 Total: -1.00 -58.55 233.43 1.57 -56.98 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.61 Total: 25.30 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 2.26 Total: -23.43 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.23 Total: -49.53 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -3.55 Total: -53.74 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -58.55 1.57 -56.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.509 kcal (2) G-P(sol) polarization free energy of solvation -58.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds