Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00307 * 2 1 4 4 C 1.53782 * 113.61831 * 210.00174 * 3 2 1 5 5 C 1.53781 * 87.08011 * 220.01624 * 4 3 2 6 6 C 1.53006 * 113.61135 * 139.98001 * 5 4 3 7 7 H 1.09001 * 109.46801 * 59.99802 * 6 5 4 8 8 O 1.42895 * 109.47036 * 299.99433 * 6 5 4 9 9 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00302 * 179.97438 * 11 9 6 13 13 Si 1.86805 * 119.99832 * 0.02562 * 11 9 6 14 14 H 1.48506 * 109.47310 * 89.99428 * 13 11 9 15 15 H 1.48491 * 109.47296 * 209.99911 * 13 11 9 16 16 H 1.48502 * 109.46905 * 329.99956 * 13 11 9 17 17 C 1.53772 * 87.08372 * 25.43027 * 5 4 3 18 18 H 1.09004 * 109.47213 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.47018 * 300.00370 * 1 2 3 20 20 H 1.08998 * 109.47105 * 60.00126 * 1 2 3 21 21 H 1.09002 * 112.85012 * 341.19509 * 3 2 1 22 22 H 1.09000 * 113.61473 * 105.46653 * 4 3 2 23 23 H 1.09007 * 113.68689 * 334.57339 * 4 3 2 24 24 H 1.09000 * 113.61407 * 270.79254 * 5 4 3 25 25 H 0.96695 * 114.00385 * 300.00682 * 8 6 5 26 26 H 0.97002 * 119.99998 * 179.97438 * 12 11 9 27 27 H 1.09000 * 113.61922 * 89.11713 * 17 5 4 28 28 H 1.08999 * 113.61689 * 220.01658 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3755 1.3719 -0.7045 5 6 3.8227 2.3181 0.4222 6 6 5.2543 2.0679 0.9006 7 1 5.9446 2.2043 0.0681 8 8 5.3641 0.7324 1.3968 9 6 5.5942 3.0419 1.9992 10 1 4.8625 3.7671 2.3234 11 6 6.8393 3.0073 2.5904 12 7 7.1361 3.8576 3.5488 13 14 8.1051 1.7534 2.0292 14 1 8.9181 2.3294 0.9280 15 1 8.9917 1.4016 3.1673 16 1 7.4118 0.5323 1.5460 17 6 2.7535 1.6489 1.3017 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.3138 2.0789 -0.3238 22 1 3.3384 1.8470 -1.6848 23 1 3.9099 0.4218 -0.7146 24 1 3.6236 3.3694 0.2142 25 1 4.7769 0.5395 2.1404 26 1 8.0119 3.8329 3.9650 27 1 3.1166 0.7741 1.8410 28 1 2.2141 2.3477 1.9411 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642842768.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -75.083298 kcal Electronic energy + Delta-G solvation = -11757.183957 eV Core-core repulsion = 9581.253089 eV Total energy + Delta-G solvation = -2175.930868 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.24176 -36.58673 -34.26702 -32.19090 -28.25316 -26.56220 -25.24146 -23.92769 -20.94491 -18.71691 -17.25456 -16.51540 -15.36864 -14.90508 -14.74493 -14.54945 -13.74686 -13.30359 -12.78763 -11.93277 -11.80207 -11.63289 -11.50586 -10.98300 -10.87377 -10.44432 -10.25124 -9.91121 -9.58902 -9.13378 -8.91604 -8.56356 -8.17857 -6.07697 -4.17685 3.42743 3.52142 3.79379 4.06301 4.58528 5.03664 5.14920 5.21481 5.27121 5.40849 5.46796 5.50668 5.67148 5.81525 5.97730 6.23481 6.37046 6.46909 6.57290 6.68242 6.95420 7.39405 7.54113 7.66655 8.35534 8.89124 9.08509 9.58024 11.03136 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.076297 B = 0.010507 C = 0.010015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.901199 B = 2664.238050 C = 2795.241145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.056 3.944 4 C -0.134 4.134 5 C -0.119 4.119 6 C 0.202 3.798 7 H 0.057 0.943 8 O -0.580 6.580 9 C -0.558 4.558 10 H 0.071 0.929 11 C 0.081 3.919 12 N -0.896 5.896 13 Si 0.870 3.130 14 H -0.288 1.288 15 H -0.297 1.297 16 H -0.217 1.217 17 C -0.141 4.141 18 H 0.079 0.921 19 H 0.038 0.962 20 H 0.036 0.964 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.354 0.646 26 H 0.264 0.736 27 H 0.090 0.910 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 -5.459 -6.472 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.001 4.001 4 C -0.172 4.172 5 C -0.138 4.138 6 C 0.145 3.855 7 H 0.074 0.926 8 O -0.387 6.387 9 C -0.596 4.596 10 H 0.089 0.911 11 C -0.123 4.123 12 N -0.534 5.534 13 Si 0.697 3.303 14 H -0.215 1.215 15 H -0.223 1.223 16 H -0.139 1.139 17 C -0.178 4.178 18 H 0.098 0.902 19 H 0.057 0.943 20 H 0.054 0.946 21 H 0.096 0.904 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.203 0.797 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.384 -5.616 -6.834 12.896 hybrid contribution 0.061 0.028 0.323 0.330 sum -9.323 -5.588 -6.511 12.670 Atomic orbital electron populations 1.22712 0.82262 1.02100 0.99518 1.87969 1.18726 1.28392 1.94686 1.23888 0.93727 0.84076 0.98435 1.23319 0.94716 1.01421 0.97701 1.22891 0.97932 0.97931 0.95001 1.19589 0.90396 0.80941 0.94591 0.92560 1.86675 1.65662 1.33398 1.52991 1.21540 1.00343 1.18038 1.19634 0.91067 1.25030 0.98460 0.94993 0.93819 1.69965 1.22042 1.36519 1.24829 0.87042 0.80202 0.85051 0.78055 1.21469 1.22343 1.13923 1.23369 0.97256 1.00884 0.96311 0.90230 0.94323 0.94557 0.90354 0.92196 0.88875 0.89478 0.79734 0.92704 0.89159 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.45 15 2 O -0.38 -6.00 10.71 -35.23 -0.38 -6.38 15 3 C 0.06 0.88 4.31 -25.92 -0.11 0.77 15 4 C -0.13 -2.28 7.37 -25.92 -0.19 -2.48 15 5 C -0.12 -2.31 3.52 -89.81 -0.32 -2.62 15 6 C 0.20 4.75 2.37 -27.88 -0.07 4.68 15 7 H 0.06 1.36 7.57 -51.93 -0.39 0.97 15 8 O -0.58 -13.39 9.41 -35.23 -0.33 -13.72 15 9 C -0.56 -15.56 9.33 -34.44 -0.32 -15.88 15 10 H 0.07 2.14 7.99 -52.48 -0.42 1.72 15 11 C 0.08 2.35 5.47 -17.82 -0.10 2.25 15 12 N -0.90 -27.61 13.96 55.43 0.77 -26.84 15 13 Si 0.87 22.10 26.99 -169.99 -4.59 17.52 15 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 15 H -0.30 -7.58 7.11 56.52 0.40 -7.18 15 16 H -0.22 -5.40 5.31 56.52 0.30 -5.10 15 17 C -0.14 -2.49 7.23 -25.92 -0.19 -2.68 15 18 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 19 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 15 20 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 15 21 H 0.08 1.08 7.87 -51.93 -0.41 0.67 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.09 1.71 7.77 -51.93 -0.40 1.31 15 24 H 0.09 1.68 8.14 -51.93 -0.42 1.26 15 25 H 0.35 7.49 6.81 45.56 0.31 7.80 15 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 27 H 0.09 1.64 5.90 -51.93 -0.31 1.34 15 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 232.11 15.07 3.50 3.50 Total: -1.00 -31.18 232.11 -4.61 -35.80 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.39 Total: 4.62 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.20 Total: -14.49 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.84 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.71 Total: -20.10 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.59 Total: 17.52 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.18 -4.61 -35.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842768.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.284 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds