Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00307 * 2 1 4 4 C 1.53782 * 113.61831 * 210.00174 * 3 2 1 5 5 C 1.53781 * 87.08011 * 220.01624 * 4 3 2 6 6 C 1.53006 * 113.61135 * 139.98001 * 5 4 3 7 7 H 1.09001 * 109.46801 * 59.99802 * 6 5 4 8 8 O 1.42895 * 109.47036 * 299.99433 * 6 5 4 9 9 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00302 * 179.97438 * 11 9 6 13 13 Si 1.86805 * 119.99832 * 0.02562 * 11 9 6 14 14 H 1.48506 * 109.47310 * 89.99428 * 13 11 9 15 15 H 1.48491 * 109.47296 * 209.99911 * 13 11 9 16 16 H 1.48502 * 109.46905 * 329.99956 * 13 11 9 17 17 C 1.53772 * 87.08372 * 25.43027 * 5 4 3 18 18 H 1.09004 * 109.47213 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.47018 * 300.00370 * 1 2 3 20 20 H 1.08998 * 109.47105 * 60.00126 * 1 2 3 21 21 H 1.09002 * 112.85012 * 341.19509 * 3 2 1 22 22 H 1.09000 * 113.61473 * 105.46653 * 4 3 2 23 23 H 1.09007 * 113.68689 * 334.57339 * 4 3 2 24 24 H 1.09000 * 113.61407 * 270.79254 * 5 4 3 25 25 H 0.96695 * 114.00385 * 300.00682 * 8 6 5 26 26 H 0.97002 * 119.99998 * 179.97438 * 12 11 9 27 27 H 1.09000 * 113.61922 * 89.11713 * 17 5 4 28 28 H 1.08999 * 113.61689 * 220.01658 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3755 1.3719 -0.7045 5 6 3.8227 2.3181 0.4222 6 6 5.2543 2.0679 0.9006 7 1 5.9446 2.2043 0.0681 8 8 5.3641 0.7324 1.3968 9 6 5.5942 3.0419 1.9992 10 1 4.8625 3.7671 2.3234 11 6 6.8393 3.0073 2.5904 12 7 7.1361 3.8576 3.5488 13 14 8.1051 1.7534 2.0292 14 1 8.9181 2.3294 0.9280 15 1 8.9917 1.4016 3.1673 16 1 7.4118 0.5323 1.5460 17 6 2.7535 1.6489 1.3017 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.3138 2.0789 -0.3238 22 1 3.3384 1.8470 -1.6848 23 1 3.9099 0.4218 -0.7146 24 1 3.6236 3.3694 0.2142 25 1 4.7769 0.5395 2.1404 26 1 8.0119 3.8329 3.9650 27 1 3.1166 0.7741 1.8410 28 1 2.2141 2.3477 1.9411 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842768.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -98.279575 kcal Electronic energy + Delta-G solvation = -11758.189823 eV Core-core repulsion = 9581.253089 eV Total energy + Delta-G solvation = -2176.936734 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.64738 -38.02352 -35.85184 -34.38716 -30.12632 -27.64802 -26.64984 -25.61833 -22.58248 -20.23804 -19.24615 -17.93867 -16.90969 -16.60339 -16.15609 -15.91436 -15.34951 -14.91173 -14.71959 -13.69841 -13.34426 -12.95809 -12.92692 -12.75519 -12.59678 -12.05879 -11.67279 -11.53801 -11.31721 -10.85150 -10.76472 -10.32977 -10.06608 -8.32650 -6.45719 1.40356 1.45793 1.76180 2.45790 2.97610 3.05209 3.73296 3.83133 3.95558 4.00117 4.14328 4.44315 4.60678 4.62123 4.84682 4.88443 4.95307 4.98583 5.07486 5.21715 5.42891 5.55002 5.68738 6.13379 6.41677 6.66807 7.18377 7.36650 8.81681 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.076297 B = 0.010507 C = 0.010015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.901199 B = 2664.238050 C = 2795.241145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.072 3.928 4 C -0.126 4.126 5 C -0.126 4.126 6 C 0.205 3.795 7 H 0.053 0.947 8 O -0.581 6.581 9 C -0.557 4.557 10 H 0.037 0.963 11 C 0.025 3.975 12 N -0.943 5.943 13 Si 0.936 3.064 14 H -0.284 1.284 15 H -0.299 1.299 16 H -0.207 1.207 17 C -0.145 4.145 18 H 0.096 0.904 19 H 0.045 0.955 20 H 0.053 0.947 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.363 0.637 26 H 0.265 0.735 27 H 0.082 0.918 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 -6.668 -7.846 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.015 3.985 4 C -0.164 4.164 5 C -0.144 4.144 6 C 0.148 3.852 7 H 0.070 0.930 8 O -0.390 6.390 9 C -0.594 4.594 10 H 0.055 0.945 11 C -0.174 4.174 12 N -0.582 5.582 13 Si 0.761 3.239 14 H -0.211 1.211 15 H -0.226 1.226 16 H -0.129 1.129 17 C -0.182 4.182 18 H 0.114 0.886 19 H 0.063 0.937 20 H 0.072 0.928 21 H 0.121 0.879 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.104 0.896 25 H 0.213 0.787 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.362 -6.833 -8.216 14.886 hybrid contribution 0.267 0.431 0.783 0.933 sum -10.096 -6.403 -7.433 14.077 Atomic orbital electron populations 1.22969 0.80006 1.03682 1.00675 1.87931 1.21232 1.28178 1.94668 1.23706 0.93688 0.84982 0.96134 1.23207 0.95242 0.99976 0.97956 1.22785 0.95732 0.98726 0.97207 1.19449 0.93060 0.79917 0.92793 0.92952 1.86607 1.66263 1.32612 1.53495 1.21872 0.99357 1.17918 1.20278 0.94469 1.25888 1.00705 0.96867 0.93971 1.70090 1.22789 1.38712 1.26647 0.86017 0.77612 0.82876 0.77401 1.21072 1.22554 1.12867 1.23383 0.97196 1.00369 0.97289 0.88588 0.93678 0.92840 0.87856 0.89978 0.90207 0.89551 0.78726 0.92601 0.89986 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.85 113.37 1.23 1.68 15 2 O -0.40 -11.53 10.71 -148.98 -1.60 -13.13 15 3 C 0.07 2.07 4.31 31.12 0.13 2.21 15 4 C -0.13 -3.98 7.37 31.12 0.23 -3.75 15 5 C -0.13 -4.72 3.52 -10.27 -0.04 -4.76 15 6 C 0.21 9.48 2.37 29.85 0.07 9.55 15 7 H 0.05 2.47 7.57 -2.39 -0.02 2.45 15 8 O -0.58 -25.99 9.41 -148.98 -1.40 -27.39 15 9 C -0.56 -31.34 9.33 25.60 0.24 -31.10 15 10 H 0.04 2.29 7.99 -2.91 -0.02 2.27 15 11 C 0.02 1.44 5.47 84.65 0.46 1.91 15 12 N -0.94 -59.19 13.96 21.45 0.30 -58.89 15 13 Si 0.94 45.80 26.99 68.60 1.85 47.66 15 14 H -0.28 -13.65 7.11 99.48 0.71 -12.94 15 15 H -0.30 -14.60 7.11 99.48 0.71 -13.89 15 16 H -0.21 -9.69 5.31 99.48 0.53 -9.16 15 17 C -0.14 -4.91 7.23 31.12 0.22 -4.69 15 18 H 0.10 1.57 8.14 -2.38 -0.02 1.55 15 19 H 0.04 0.83 8.14 -2.38 -0.02 0.81 15 20 H 0.05 0.88 8.14 -2.39 -0.02 0.86 15 21 H 0.10 2.46 7.87 -2.39 -0.02 2.44 15 22 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.08 2.76 7.77 -2.38 -0.02 2.74 15 24 H 0.09 3.24 8.14 -2.39 -0.02 3.22 15 25 H 0.36 14.95 6.81 -74.06 -0.50 14.45 15 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 15 27 H 0.08 2.90 5.90 -2.39 -0.01 2.88 15 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 Total: -1.00 -66.04 232.11 2.17 -63.87 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.46 Total: 16.84 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 2.55 Total: -28.96 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -3.00 Total: -40.52 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.85 Total: 47.66 kcal Total: -66.04 2.17 -63.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842768.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.409 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds