Wall clock time and date at job start Mon Mar 30 2020 02:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.53779 * 113.61228 * 247.49468 * 3 2 1 5 5 C 1.53780 * 87.08266 * 220.01911 * 4 3 2 6 6 C 1.53003 * 113.61739 * 139.97845 * 5 4 3 7 7 H 1.08995 * 109.47420 * 207.50306 * 6 5 4 8 8 O 1.42905 * 109.47102 * 327.50680 * 6 5 4 9 9 C 1.50705 * 109.46769 * 87.50435 * 6 5 4 10 10 H 1.07998 * 120.00181 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99861 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99828 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99891 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47064 * 90.00371 * 13 11 9 15 15 H 1.48501 * 109.47035 * 209.99843 * 13 11 9 16 16 H 1.48492 * 109.47308 * 329.99833 * 13 11 9 17 17 C 1.53782 * 87.08140 * 25.43305 * 5 4 3 18 18 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 19 19 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 21 21 H 1.08999 * 112.85455 * 18.80149 * 3 2 1 22 22 H 1.08999 * 113.61667 * 334.56595 * 4 3 2 23 23 H 1.08997 * 113.61675 * 105.47134 * 4 3 2 24 24 H 1.08995 * 113.61843 * 270.88779 * 5 4 3 25 25 H 0.96704 * 113.99625 * 59.99760 * 8 6 5 26 26 H 0.97006 * 120.00072 * 180.02562 * 12 11 9 27 27 H 1.08996 * 113.61865 * 220.01800 * 17 5 4 28 28 H 1.09006 * 113.69263 * 89.12599 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7535 1.6488 -1.3017 5 6 3.8227 2.3182 -0.4222 6 6 5.2543 2.0680 -0.9006 7 1 5.9352 2.1170 -0.0508 8 8 5.3362 0.7745 -1.5027 9 6 5.6367 3.1179 -1.9118 10 1 4.9296 3.8869 -2.1856 11 6 6.8894 3.0967 -2.4875 12 7 7.7503 2.1600 -2.1545 13 14 7.3631 4.3977 -3.7414 14 1 7.9755 5.5572 -3.0444 15 1 8.3398 3.8260 -4.7030 16 1 6.1509 4.8441 -4.4737 17 6 3.3756 1.3720 0.7046 18 1 -0.3632 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.3138 2.0789 0.3237 22 1 3.1167 0.7740 -1.8409 23 1 2.2141 2.3476 -1.9412 24 1 3.6222 3.3693 -0.2149 25 1 4.7556 0.6592 -2.2673 26 1 8.6318 2.1452 -2.5592 27 1 3.3384 1.8471 1.6848 28 1 3.9082 0.4210 0.7151 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642842769.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:55 Heat of formation + Delta-G solvation = -80.023660 kcal Electronic energy + Delta-G solvation = -11693.087183 eV Core-core repulsion = 9516.942085 eV Total energy + Delta-G solvation = -2176.145098 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09563 -36.38175 -33.99197 -32.04332 -27.86774 -26.43143 -25.14447 -23.91628 -21.05813 -18.56742 -16.86832 -16.48949 -15.27994 -14.83399 -14.55860 -14.30898 -13.87914 -13.02993 -12.70732 -11.84999 -11.54893 -11.44042 -11.16470 -10.91481 -10.89737 -10.42261 -10.17766 -9.92382 -9.79514 -9.06097 -8.87112 -8.49304 -8.01713 -5.94941 -4.12447 3.30273 3.37401 3.39867 4.13331 4.43306 5.12160 5.22152 5.30561 5.32747 5.47866 5.53223 5.62946 5.71452 5.94580 6.28934 6.35708 6.44539 6.58459 6.76263 6.88659 7.12570 7.61076 7.79237 7.90930 8.26562 8.90781 9.45345 9.64867 11.09227 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.081285 B = 0.009484 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.383401 B = 2951.523423 C = 3059.741381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.056 3.944 4 C -0.144 4.144 5 C -0.129 4.129 6 C 0.238 3.762 7 H 0.058 0.942 8 O -0.563 6.563 9 C -0.567 4.567 10 H 0.055 0.945 11 C 0.077 3.923 12 N -0.861 5.861 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.132 4.132 18 H 0.037 0.963 19 H 0.079 0.921 20 H 0.035 0.965 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.344 0.656 26 H 0.259 0.741 27 H 0.058 0.942 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 -0.751 2.794 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.001 4.001 4 C -0.181 4.181 5 C -0.148 4.148 6 C 0.181 3.819 7 H 0.075 0.925 8 O -0.367 6.367 9 C -0.605 4.605 10 H 0.073 0.927 11 C -0.128 4.128 12 N -0.497 5.497 13 Si 0.715 3.285 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.169 4.169 18 H 0.056 0.944 19 H 0.097 0.903 20 H 0.054 0.946 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.189 0.811 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.307 -1.089 3.256 10.864 hybrid contribution -0.353 1.203 -1.144 1.697 sum -10.660 0.114 2.112 10.868 Atomic orbital electron populations 1.22705 0.82415 1.02049 0.99412 1.87987 1.18585 1.28471 1.94683 1.23906 0.93737 0.83943 0.98549 1.23405 0.97362 1.01017 0.96335 1.23146 0.99215 0.97417 0.94973 1.19185 0.87832 0.81643 0.93244 0.92464 1.86575 1.67449 1.35528 1.47161 1.21690 0.99363 1.13447 1.26028 0.92712 1.25064 0.96400 0.95069 0.96310 1.70082 1.06013 1.31803 1.41840 0.86700 0.78382 0.81933 0.81498 1.20623 1.21188 1.19895 1.23293 0.94481 1.01492 0.97639 0.94431 0.90262 0.94613 0.90540 0.88947 0.92407 0.89990 0.81084 0.93070 0.92372 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.85 101.05 1.10 1.47 15 2 O -0.38 -6.31 10.71 -35.23 -0.38 -6.68 15 3 C 0.06 0.93 4.31 -25.92 -0.11 0.82 15 4 C -0.14 -2.65 7.17 -25.92 -0.19 -2.83 15 5 C -0.13 -2.64 3.53 -89.81 -0.32 -2.96 15 6 C 0.24 6.12 2.87 -27.88 -0.08 6.04 15 7 H 0.06 1.62 8.14 -51.93 -0.42 1.19 15 8 O -0.56 -14.81 12.10 -35.23 -0.43 -15.24 15 9 C -0.57 -15.71 8.75 -34.44 -0.30 -16.01 15 10 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 11 C 0.08 2.19 5.40 -17.82 -0.10 2.09 15 12 N -0.86 -25.86 12.84 55.43 0.71 -25.14 15 13 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 17 C -0.13 -2.42 7.40 -25.92 -0.19 -2.61 15 18 H 0.04 0.42 8.14 -51.93 -0.42 0.00 15 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 15 21 H 0.08 1.11 7.87 -51.93 -0.41 0.70 15 22 H 0.09 1.79 5.86 -51.93 -0.30 1.49 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.08 1.64 8.12 -51.93 -0.42 1.22 15 25 H 0.34 8.19 6.84 45.56 0.31 8.50 15 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 28 H 0.09 1.87 7.96 -51.93 -0.41 1.45 15 LS Contribution 238.35 15.07 3.59 3.59 Total: -1.00 -30.79 238.35 -5.02 -35.82 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.31 Total: 5.30 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.19 Total: -14.00 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.71 Total: -25.14 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.80 Total: -21.92 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.79 -5.02 -35.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842769.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.208 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds