Wall clock time and date at job start Mon Mar 30 2020 02:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.53779 * 113.61228 * 247.49468 * 3 2 1 5 5 C 1.53780 * 87.08266 * 220.01911 * 4 3 2 6 6 C 1.53003 * 113.61739 * 139.97845 * 5 4 3 7 7 H 1.08995 * 109.47420 * 207.50306 * 6 5 4 8 8 O 1.42905 * 109.47102 * 327.50680 * 6 5 4 9 9 C 1.50705 * 109.46769 * 87.50435 * 6 5 4 10 10 H 1.07998 * 120.00181 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99861 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99828 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99891 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47064 * 90.00371 * 13 11 9 15 15 H 1.48501 * 109.47035 * 209.99843 * 13 11 9 16 16 H 1.48492 * 109.47308 * 329.99833 * 13 11 9 17 17 C 1.53782 * 87.08140 * 25.43305 * 5 4 3 18 18 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 19 19 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 21 21 H 1.08999 * 112.85455 * 18.80149 * 3 2 1 22 22 H 1.08999 * 113.61667 * 334.56595 * 4 3 2 23 23 H 1.08997 * 113.61675 * 105.47134 * 4 3 2 24 24 H 1.08995 * 113.61843 * 270.88779 * 5 4 3 25 25 H 0.96704 * 113.99625 * 59.99760 * 8 6 5 26 26 H 0.97006 * 120.00072 * 180.02562 * 12 11 9 27 27 H 1.08996 * 113.61865 * 220.01800 * 17 5 4 28 28 H 1.09006 * 113.69263 * 89.12599 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7535 1.6488 -1.3017 5 6 3.8227 2.3182 -0.4222 6 6 5.2543 2.0680 -0.9006 7 1 5.9352 2.1170 -0.0508 8 8 5.3362 0.7745 -1.5027 9 6 5.6367 3.1179 -1.9118 10 1 4.9296 3.8869 -2.1856 11 6 6.8894 3.0967 -2.4875 12 7 7.7503 2.1600 -2.1545 13 14 7.3631 4.3977 -3.7414 14 1 7.9755 5.5572 -3.0444 15 1 8.3398 3.8260 -4.7030 16 1 6.1509 4.8441 -4.4737 17 6 3.3756 1.3720 0.7046 18 1 -0.3632 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.3138 2.0789 0.3237 22 1 3.1167 0.7740 -1.8409 23 1 2.2141 2.3476 -1.9412 24 1 3.6222 3.3693 -0.2149 25 1 4.7556 0.6592 -2.2673 26 1 8.6318 2.1452 -2.5592 27 1 3.3384 1.8471 1.6848 28 1 3.9082 0.4210 0.7151 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842769.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:55 Heat of formation + Delta-G solvation = -102.662500 kcal Electronic energy + Delta-G solvation = -11694.068876 eV Core-core repulsion = 9516.942085 eV Total energy + Delta-G solvation = -2177.126792 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.57354 -37.90031 -35.74858 -34.20525 -29.76517 -27.59304 -26.65151 -25.69004 -22.73496 -20.15998 -18.94604 -17.90410 -16.74116 -16.62468 -16.03143 -15.84418 -15.49832 -14.89525 -14.32663 -13.50694 -13.14296 -12.95312 -12.85607 -12.70460 -12.49531 -12.18702 -11.65286 -11.57225 -11.47916 -10.86157 -10.61691 -10.32794 -10.01398 -8.10257 -6.35657 1.41197 1.41806 1.52724 2.40841 2.99130 3.14891 3.75366 3.86399 4.00357 4.06303 4.30593 4.48170 4.62017 4.63948 4.85876 4.89705 4.97004 5.05103 5.09968 5.30230 5.51566 5.68077 5.81032 6.14256 6.43508 6.76979 7.35685 7.56614 8.94244 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.081285 B = 0.009484 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.383401 B = 2951.523423 C = 3059.741381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.075 3.925 4 C -0.143 4.143 5 C -0.130 4.130 6 C 0.234 3.766 7 H 0.019 0.981 8 O -0.579 6.579 9 C -0.579 4.579 10 H 0.061 0.939 11 C 0.021 3.979 12 N -0.905 5.905 13 Si 0.960 3.040 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.263 1.263 17 C -0.132 4.132 18 H 0.047 0.953 19 H 0.095 0.905 20 H 0.053 0.947 21 H 0.109 0.891 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.353 0.647 26 H 0.260 0.740 27 H 0.078 0.922 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 0.246 2.476 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.018 3.982 4 C -0.180 4.180 5 C -0.149 4.149 6 C 0.177 3.823 7 H 0.036 0.964 8 O -0.385 6.385 9 C -0.616 4.616 10 H 0.079 0.921 11 C -0.181 4.181 12 N -0.542 5.542 13 Si 0.785 3.215 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.187 1.187 17 C -0.170 4.170 18 H 0.066 0.934 19 H 0.113 0.887 20 H 0.072 0.928 21 H 0.126 0.874 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.199 0.801 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.152 -0.088 2.941 12.503 hybrid contribution 0.183 0.838 -1.011 1.326 sum -11.969 0.749 1.930 12.147 Atomic orbital electron populations 1.22979 0.79892 1.03674 1.00790 1.87950 1.21383 1.28348 1.94681 1.23705 0.93347 0.84979 0.96176 1.23365 0.96964 1.00441 0.97260 1.22965 0.96391 0.98559 0.96995 1.19074 0.90457 0.81022 0.91758 0.96351 1.86516 1.68242 1.35936 1.47791 1.22088 0.99609 1.13838 1.26099 0.92070 1.25964 0.96424 0.97240 0.98471 1.70233 1.06470 1.34059 1.43461 0.85550 0.78227 0.78992 0.78736 1.19890 1.21142 1.18695 1.23206 0.95762 0.99755 0.98232 0.93387 0.88704 0.92801 0.87381 0.90494 0.90907 0.89081 0.80072 0.93118 0.90323 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.85 113.37 1.23 1.70 15 2 O -0.40 -12.54 10.71 -148.98 -1.60 -14.13 15 3 C 0.08 2.31 4.31 31.12 0.13 2.44 15 4 C -0.14 -5.04 7.17 31.12 0.22 -4.82 15 5 C -0.13 -5.27 3.53 -10.27 -0.04 -5.31 15 6 C 0.23 12.28 2.87 29.85 0.09 12.37 15 7 H 0.02 1.10 8.14 -2.39 -0.02 1.08 15 8 O -0.58 -31.34 12.10 -148.98 -1.80 -33.14 15 9 C -0.58 -32.13 8.75 25.60 0.22 -31.91 15 10 H 0.06 3.24 7.74 -2.91 -0.02 3.22 15 11 C 0.02 1.17 5.40 84.65 0.46 1.63 15 12 N -0.90 -55.41 12.84 21.45 0.28 -55.14 15 13 Si 0.96 43.83 29.54 68.60 2.03 45.86 15 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 15 H -0.29 -12.92 7.11 99.48 0.71 -12.22 15 16 H -0.26 -11.41 7.11 99.48 0.71 -10.71 15 17 C -0.13 -4.73 7.40 31.12 0.23 -4.50 15 18 H 0.05 0.90 8.14 -2.39 -0.02 0.88 15 19 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 20 H 0.05 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.11 2.66 7.87 -2.39 -0.02 2.64 15 22 H 0.08 2.95 5.86 -2.39 -0.01 2.93 15 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.09 3.50 8.12 -2.39 -0.02 3.48 15 25 H 0.35 17.21 6.84 -74.05 -0.51 16.71 15 26 H 0.26 15.05 8.31 -92.70 -0.77 14.28 15 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 28 H 0.07 2.72 7.96 -2.38 -0.02 2.70 15 Total: -1.00 -66.11 238.35 2.08 -64.03 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.63 Total: 20.92 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 2.55 Total: -28.39 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -3.40 Total: -47.28 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.11 2.08 -64.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842769.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.637 kcal (2) G-P(sol) polarization free energy of solvation -66.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds