Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99834 * 2 1 4 4 C 1.52998 * 110.75382 * 55.35601 * 3 2 1 5 5 C 1.50704 * 109.47134 * 59.86394 * 4 3 2 6 6 H 1.07999 * 119.99843 * 355.05195 * 5 4 3 7 7 C 1.37883 * 120.00100 * 175.06045 * 5 4 3 8 8 N 1.31510 * 119.99594 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99679 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47437 * 60.00148 * 9 7 5 11 11 H 1.48507 * 109.46499 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47321 * 299.99337 * 9 7 5 13 13 C 1.55300 * 110.85000 * 291.65940 * 3 2 1 14 14 C 1.54946 * 100.94523 * 275.94327 * 13 3 2 15 15 O 1.43648 * 105.13262 * 323.55363 * 14 13 3 16 16 C 1.43236 * 109.97313 * 24.42748 * 15 14 13 17 17 H 1.09002 * 109.46980 * 174.24386 * 1 2 3 18 18 H 1.08997 * 109.47422 * 294.24217 * 1 2 3 19 19 H 1.08997 * 109.47128 * 54.24782 * 1 2 3 20 20 H 1.08995 * 109.47934 * 179.86557 * 4 3 2 21 21 H 1.09004 * 109.46773 * 299.87253 * 4 3 2 22 22 H 0.97003 * 119.99526 * 180.02562 * 8 7 5 23 23 H 1.09002 * 111.12439 * 33.85907 * 13 3 2 24 24 H 1.08997 * 111.13065 * 158.02509 * 13 3 2 25 25 H 1.08993 * 110.31660 * 204.64149 * 14 13 3 26 26 H 1.09001 * 110.31269 * 82.46616 * 14 13 3 27 27 H 1.08994 * 109.83032 * 238.77726 * 16 15 14 28 28 H 1.09003 * 109.90911 * 117.84269 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4876 2.1315 1.1770 5 6 1.8371 1.4407 2.4700 6 1 2.3064 0.4681 2.4529 7 6 1.5574 2.0501 3.6748 8 7 0.9863 3.2345 3.6955 9 14 1.9912 1.1940 5.2774 10 1 3.4555 0.9523 5.3289 11 1 1.5911 2.0525 6.4211 12 1 1.2723 -0.1030 5.3561 13 6 1.7456 2.0283 -1.3488 14 6 2.9014 1.4672 -2.2149 15 8 4.0178 1.3480 -1.3188 16 6 3.5514 1.2208 0.0295 17 1 -0.3633 -1.0225 -0.1031 18 1 -0.3634 0.4219 0.9370 19 1 -0.3633 0.6004 -0.8340 20 1 1.9452 3.1206 1.1585 21 1 0.4049 2.2305 1.0991 22 1 0.7899 3.6634 4.5432 23 1 0.7755 1.7495 -1.7602 24 1 1.8271 3.1095 -1.2378 25 1 3.1379 2.1582 -3.0240 26 1 2.6331 0.4903 -2.6170 27 1 3.9546 2.0301 0.6381 28 1 3.8611 0.2598 0.4403 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692815037.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = -98.123082 kcal Electronic energy + Delta-G solvation = -12076.530595 eV Core-core repulsion = 9899.600648 eV Total energy + Delta-G solvation = -2176.929948 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.35688 -36.30860 -33.09107 -31.06265 -29.39208 -27.00419 -25.53035 -23.22882 -21.73723 -19.36723 -16.70809 -16.13274 -15.56713 -14.71960 -14.50083 -14.29239 -13.96763 -13.37902 -12.45081 -12.21856 -11.77746 -11.54166 -11.23982 -10.92094 -10.86465 -10.65142 -10.52230 -10.07234 -9.71956 -9.13959 -8.92964 -8.54249 -8.41599 -6.05401 -4.07355 3.32645 3.36626 3.40257 4.37897 4.45116 4.52535 5.12548 5.30531 5.43907 5.53471 5.77114 5.86170 6.05521 6.06361 6.28446 6.36597 6.37640 6.44164 6.57776 6.75915 7.39814 7.46165 7.54592 7.90276 8.07586 8.33474 8.99171 9.57107 11.05793 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.051168 B = 0.012732 C = 0.012083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.089155 B = 2198.655182 C = 2316.757997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.372 6.372 3 C 0.092 3.908 4 C 0.009 3.991 5 C -0.513 4.513 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.186 4.186 14 C 0.058 3.942 15 O -0.395 6.395 16 C 0.074 3.926 17 H 0.070 0.930 18 H 0.058 0.942 19 H 0.029 0.971 20 H 0.032 0.968 21 H 0.021 0.979 22 H 0.261 0.739 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -2.782 -7.659 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.291 6.291 3 C 0.052 3.948 4 C -0.028 4.028 5 C -0.551 4.551 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.224 4.224 14 C -0.018 4.018 15 O -0.315 6.315 16 C -0.002 4.002 17 H 0.089 0.911 18 H 0.077 0.923 19 H 0.047 0.953 20 H 0.050 0.950 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.309 -2.811 -7.589 8.099 hybrid contribution -0.376 -0.159 1.016 1.095 sum -0.066 -2.970 -6.573 7.213 Atomic orbital electron populations 1.22632 0.82119 1.00785 1.00716 1.87811 1.19203 1.27228 1.94863 1.23173 0.93185 0.83951 0.94460 1.19575 0.96805 0.95164 0.91225 1.21077 1.39872 1.03978 0.90168 0.92055 1.25012 0.95203 0.94884 0.99291 1.69949 1.42582 1.14755 1.26336 0.86626 0.79012 0.79433 0.82792 1.20127 1.21376 1.20218 1.23863 0.99274 1.01589 0.97683 1.23214 0.86270 0.99482 0.92863 1.88314 1.30919 1.94970 1.17305 1.23095 0.92062 1.02543 0.82458 0.91115 0.92346 0.95251 0.94971 0.96064 0.92895 0.90352 0.89791 0.90713 0.92715 0.89306 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.22 101.05 1.03 1.65 15 2 O -0.37 -7.94 10.01 -35.23 -0.35 -8.29 15 3 C 0.09 1.95 0.49 -88.67 -0.04 1.90 15 4 C 0.01 0.23 3.45 -27.88 -0.10 0.14 15 5 C -0.51 -14.08 8.27 -34.44 -0.28 -14.36 15 6 H 0.06 1.69 7.60 -52.49 -0.40 1.29 15 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 8 N -0.90 -26.27 13.29 55.43 0.74 -25.54 15 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 13 C -0.19 -3.28 6.18 -24.48 -0.15 -3.43 15 14 C 0.06 0.96 7.78 38.18 0.30 1.26 15 15 O -0.40 -7.77 11.36 -35.23 -0.40 -8.17 15 16 C 0.07 1.55 6.60 37.88 0.25 1.80 15 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 18 H 0.06 1.20 6.76 -51.93 -0.35 0.85 15 19 H 0.03 0.47 6.37 -51.93 -0.33 0.14 15 20 H 0.03 0.85 8.13 -51.93 -0.42 0.43 15 21 H 0.02 0.55 6.75 -51.93 -0.35 0.20 15 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 23 H 0.08 1.25 6.38 -51.93 -0.33 0.92 15 24 H 0.08 1.45 8.05 -51.93 -0.42 1.03 15 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 27 H 0.09 1.90 7.80 -51.93 -0.41 1.50 15 28 H 0.07 1.53 8.07 -51.93 -0.42 1.11 15 LS Contribution 232.60 15.07 3.51 3.51 Total: -1.00 -29.72 232.60 -4.46 -34.17 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -3.83 Total: -2.67 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 0.91 Total: -9.53 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.75 Total: -16.47 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.72 -4.46 -34.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692815037.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.951 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds