Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99834 * 2 1 4 4 C 1.52998 * 110.75382 * 55.35601 * 3 2 1 5 5 C 1.50704 * 109.47134 * 59.86394 * 4 3 2 6 6 H 1.07999 * 119.99843 * 355.05195 * 5 4 3 7 7 C 1.37883 * 120.00100 * 175.06045 * 5 4 3 8 8 N 1.31510 * 119.99594 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99679 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47437 * 60.00148 * 9 7 5 11 11 H 1.48507 * 109.46499 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47321 * 299.99337 * 9 7 5 13 13 C 1.55300 * 110.85000 * 291.65940 * 3 2 1 14 14 C 1.54946 * 100.94523 * 275.94327 * 13 3 2 15 15 O 1.43648 * 105.13262 * 323.55363 * 14 13 3 16 16 C 1.43236 * 109.97313 * 24.42748 * 15 14 13 17 17 H 1.09002 * 109.46980 * 174.24386 * 1 2 3 18 18 H 1.08997 * 109.47422 * 294.24217 * 1 2 3 19 19 H 1.08997 * 109.47128 * 54.24782 * 1 2 3 20 20 H 1.08995 * 109.47934 * 179.86557 * 4 3 2 21 21 H 1.09004 * 109.46773 * 299.87253 * 4 3 2 22 22 H 0.97003 * 119.99526 * 180.02562 * 8 7 5 23 23 H 1.09002 * 111.12439 * 33.85907 * 13 3 2 24 24 H 1.08997 * 111.13065 * 158.02509 * 13 3 2 25 25 H 1.08993 * 110.31660 * 204.64149 * 14 13 3 26 26 H 1.09001 * 110.31269 * 82.46616 * 14 13 3 27 27 H 1.08994 * 109.83032 * 238.77726 * 16 15 14 28 28 H 1.09003 * 109.90911 * 117.84269 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4876 2.1315 1.1770 5 6 1.8371 1.4407 2.4700 6 1 2.3064 0.4681 2.4529 7 6 1.5574 2.0501 3.6748 8 7 0.9863 3.2345 3.6955 9 14 1.9912 1.1940 5.2774 10 1 3.4555 0.9523 5.3289 11 1 1.5911 2.0525 6.4211 12 1 1.2723 -0.1030 5.3561 13 6 1.7456 2.0283 -1.3488 14 6 2.9014 1.4672 -2.2149 15 8 4.0178 1.3480 -1.3188 16 6 3.5514 1.2208 0.0295 17 1 -0.3633 -1.0225 -0.1031 18 1 -0.3634 0.4219 0.9370 19 1 -0.3633 0.6004 -0.8340 20 1 1.9452 3.1206 1.1585 21 1 0.4049 2.2305 1.0991 22 1 0.7899 3.6634 4.5432 23 1 0.7755 1.7495 -1.7602 24 1 1.8271 3.1095 -1.2378 25 1 3.1379 2.1582 -3.0240 26 1 2.6331 0.4903 -2.6170 27 1 3.9546 2.0301 0.6381 28 1 3.8611 0.2598 0.4403 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692815037.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = -118.766652 kcal Electronic energy + Delta-G solvation = -12077.425768 eV Core-core repulsion = 9899.600648 eV Total energy + Delta-G solvation = -2177.825120 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93465 -37.88833 -35.15789 -32.78692 -30.98212 -28.80022 -27.12820 -25.18043 -23.21859 -21.04620 -18.54285 -17.98445 -17.18314 -16.50504 -16.03553 -15.99140 -15.58980 -14.91949 -14.35468 -13.80679 -13.55126 -13.33536 -12.91771 -12.65016 -12.53229 -12.33141 -12.23362 -11.91120 -11.51504 -11.02778 -10.58606 -10.47476 -10.21912 -8.20565 -6.29116 1.40200 1.41791 1.49860 2.40333 2.89057 2.98952 3.13299 3.61898 3.99391 4.06594 4.35234 4.45897 4.53135 4.73892 4.76421 4.81342 4.88319 4.97060 5.01624 5.11946 5.33419 5.47706 5.74947 6.00323 6.18970 6.46743 6.83955 7.39069 8.90617 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.051168 B = 0.012732 C = 0.012083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.089155 B = 2198.655182 C = 2316.757997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.089 3.911 4 C 0.018 3.982 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.270 1.270 13 C -0.179 4.179 14 C 0.056 3.944 15 O -0.404 6.404 16 C 0.079 3.921 17 H 0.100 0.900 18 H 0.028 0.972 19 H 0.052 0.948 20 H 0.008 0.992 21 H 0.005 0.995 22 H 0.263 0.737 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -3.600 -8.490 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.050 3.950 4 C -0.019 4.019 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.196 1.196 13 C -0.217 4.217 14 C -0.019 4.019 15 O -0.324 6.324 16 C 0.002 3.998 17 H 0.119 0.881 18 H 0.046 0.954 19 H 0.070 0.930 20 H 0.026 0.974 21 H 0.023 0.977 22 H 0.072 0.928 23 H 0.117 0.883 24 H 0.102 0.898 25 H 0.126 0.874 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.334 -3.637 -8.436 9.192 hybrid contribution -0.419 0.097 1.226 1.299 sum -0.085 -3.540 -7.210 8.032 Atomic orbital electron populations 1.22775 0.80636 1.02963 1.00061 1.87788 1.20823 1.27025 1.94927 1.23024 0.93241 0.83922 0.94843 1.19401 0.95572 0.94505 0.92447 1.21347 1.39419 1.03805 0.91506 0.92619 1.25833 0.95149 0.95540 1.02772 1.70060 1.43708 1.16122 1.27209 0.85622 0.79009 0.78479 0.78703 1.19396 1.20848 1.19553 1.23820 1.00986 1.01248 0.95608 1.23466 0.84763 1.01012 0.92682 1.88300 1.32260 1.95040 1.16820 1.22898 0.91953 1.01589 0.83332 0.88129 0.95376 0.92955 0.97356 0.97655 0.92791 0.88341 0.89760 0.87395 0.91485 0.90724 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 10.22 113.37 1.16 2.27 15 2 O -0.39 -16.00 10.01 -148.98 -1.49 -17.49 15 3 C 0.09 3.73 0.49 -9.53 0.00 3.73 15 4 C 0.02 0.91 3.45 29.85 0.10 1.02 15 5 C -0.52 -29.06 8.27 25.60 0.21 -28.85 15 6 H 0.06 3.10 7.60 -2.91 -0.02 3.08 15 7 C 0.01 0.28 5.46 84.66 0.46 0.75 15 8 N -0.93 -55.27 13.29 21.45 0.28 -54.99 15 9 Si 0.96 44.25 29.54 68.60 2.03 46.27 15 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 13 C -0.18 -5.93 6.18 32.05 0.20 -5.73 15 14 C 0.06 1.69 7.78 72.65 0.56 2.26 15 15 O -0.40 -15.20 11.36 -148.98 -1.69 -16.89 15 16 C 0.08 3.26 6.60 72.45 0.48 3.74 15 17 H 0.10 2.88 8.14 -2.39 -0.02 2.86 15 18 H 0.03 1.14 6.76 -2.39 -0.02 1.12 15 19 H 0.05 1.57 6.37 -2.39 -0.02 1.56 15 20 H 0.01 0.45 8.13 -2.39 -0.02 0.43 15 21 H 0.01 0.28 6.75 -2.39 -0.02 0.26 15 22 H 0.26 14.81 8.31 -92.71 -0.77 14.04 15 23 H 0.10 2.84 6.38 -2.39 -0.02 2.83 15 24 H 0.08 2.78 8.05 -2.39 -0.02 2.76 15 25 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 27 H 0.07 3.26 7.80 -2.39 -0.02 3.24 15 28 H 0.07 2.78 8.07 -2.39 -0.02 2.76 15 Total: -1.00 -62.91 232.60 3.43 -59.49 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.13 Total: 4.44 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.17 Total: -20.83 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.28 Total: -54.99 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -3.18 Total: -34.39 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -62.91 3.43 -59.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692815037.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.281 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds