Wall clock time and date at job start Mon Mar 30 2020 02:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99682 * 2 1 4 4 C 1.53008 * 110.45492 * 62.93611 * 3 2 1 5 5 C 1.50695 * 109.46959 * 59.65567 * 4 3 2 6 6 H 1.07995 * 120.00383 * 355.03165 * 5 4 3 7 7 C 1.37880 * 119.99830 * 175.03831 * 5 4 3 8 8 N 1.31515 * 119.99799 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47109 * 89.99836 * 9 7 5 11 11 H 1.48501 * 109.47255 * 209.99802 * 9 7 5 12 12 H 1.48505 * 109.47281 * 330.00041 * 9 7 5 13 13 C 1.54511 * 110.50863 * 185.53719 * 3 2 1 14 14 C 1.54479 * 104.05991 * 118.64751 * 13 3 2 15 15 O 1.44423 * 104.80593 * 23.97692 * 14 13 3 16 16 C 1.44647 * 105.36762 * 319.56702 * 15 14 13 17 17 H 1.09004 * 109.47332 * 294.97305 * 1 2 3 18 18 H 1.09000 * 109.47644 * 54.97573 * 1 2 3 19 19 H 1.09004 * 109.47117 * 174.97517 * 1 2 3 20 20 H 1.08999 * 109.46596 * 179.65333 * 4 3 2 21 21 H 1.08990 * 109.46923 * 299.64935 * 4 3 2 22 22 H 0.96999 * 119.99817 * 180.02562 * 8 7 5 23 23 H 1.08994 * 110.51082 * 237.28861 * 13 3 2 24 24 H 1.09000 * 110.51400 * 0.02562 * 13 3 2 25 25 H 1.08995 * 110.37615 * 142.80894 * 14 13 3 26 26 H 1.09007 * 110.37349 * 265.15016 * 14 13 3 27 27 H 1.08990 * 110.34042 * 281.58887 * 16 15 14 28 28 H 1.09003 * 110.50565 * 159.18059 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6317 2.0593 1.2766 5 6 2.1272 1.2947 2.4769 6 1 2.5874 0.3262 2.3481 7 6 1.9929 1.8315 3.7398 8 7 1.4328 3.0110 3.8967 9 14 2.6065 0.8835 5.2278 10 1 4.0220 1.2441 5.4953 11 1 1.7763 1.2268 6.4103 12 1 2.5089 -0.5741 4.9609 13 6 3.5462 1.2142 -0.1396 14 6 3.8482 1.9603 -1.4582 15 8 2.7303 2.8565 -1.6395 16 6 1.5628 2.0971 -1.2488 17 1 -0.3634 0.4339 0.9316 18 1 -0.3634 0.5898 -0.8415 19 1 -0.3633 -1.0238 -0.0900 20 1 2.0878 3.0492 1.2627 21 1 0.5478 2.1594 1.3316 22 1 1.3386 3.3889 4.7851 23 1 4.0360 1.7083 0.6994 24 1 3.8623 0.1734 -0.2091 25 1 4.7766 2.5246 -1.3709 26 1 3.9079 1.2557 -2.2878 27 1 1.2707 1.4142 -2.0464 28 1 0.7386 2.7653 -0.9993 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692815039.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:07 Heat of formation + Delta-G solvation = -97.753768 kcal Electronic energy + Delta-G solvation = -12078.254150 eV Core-core repulsion = 9901.340216 eV Total energy + Delta-G solvation = -2176.913933 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.34703 -36.36714 -33.05300 -31.06242 -28.99546 -26.87013 -26.01238 -22.98244 -21.92292 -19.25721 -16.73611 -15.96773 -15.51062 -14.97337 -14.40856 -14.07235 -13.83992 -13.56131 -12.74108 -12.13315 -11.77172 -11.42918 -11.05841 -10.96990 -10.71788 -10.48769 -10.45498 -10.12645 -9.71171 -9.42548 -8.99068 -8.44638 -8.36642 -5.99953 -4.00916 3.32475 3.38908 3.43494 4.25490 4.47425 4.77947 5.27023 5.35965 5.45398 5.56541 5.67998 5.84999 5.91796 6.08564 6.11837 6.25995 6.36265 6.39732 6.70938 6.90822 7.19705 7.50047 7.58331 7.95737 8.11933 8.41068 9.05830 9.62392 11.11489 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046134 B = 0.013301 C = 0.012361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.779730 B = 2104.589787 C = 2264.560537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.092 3.908 4 C 0.010 3.990 5 C -0.506 4.506 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.273 1.273 13 C -0.133 4.133 14 C 0.044 3.956 15 O -0.375 6.375 16 C 0.020 3.980 17 H 0.054 0.946 18 H 0.028 0.972 19 H 0.072 0.928 20 H 0.034 0.966 21 H 0.017 0.983 22 H 0.260 0.740 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 -3.407 -7.849 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C 0.052 3.948 4 C -0.027 4.027 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.170 4.170 14 C -0.033 4.033 15 O -0.294 6.294 16 C -0.057 4.057 17 H 0.073 0.927 18 H 0.047 0.953 19 H 0.090 0.910 20 H 0.052 0.948 21 H 0.035 0.965 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.001 -3.226 -7.790 8.491 hybrid contribution 0.008 -0.446 0.985 1.081 sum 1.009 -3.672 -6.805 7.798 Atomic orbital electron populations 1.22607 0.82369 1.01031 1.00364 1.87836 1.18888 1.27525 1.94930 1.23077 0.92676 0.83303 0.95710 1.19628 0.96991 0.95940 0.90159 1.21097 1.38715 1.03931 0.90662 0.92065 1.25020 0.95509 0.94979 0.99069 1.69968 1.44339 1.16709 1.22707 0.86593 0.78691 0.80373 0.82373 1.20710 1.21345 1.19836 1.22826 0.94848 1.01414 0.97947 1.23435 0.90644 0.92622 0.96560 1.89095 1.16019 1.36577 1.87721 1.24167 0.89612 0.95451 0.96447 0.92746 0.95316 0.90969 0.94769 0.96500 0.93043 0.88525 0.90483 0.89459 0.93069 0.92824 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.35 101.05 1.05 1.64 15 2 O -0.37 -7.91 9.89 -35.23 -0.35 -8.25 15 3 C 0.09 1.96 0.71 -89.05 -0.06 1.90 15 4 C 0.01 0.25 3.53 -27.88 -0.10 0.15 15 5 C -0.51 -14.13 7.96 -34.44 -0.27 -14.40 15 6 H 0.06 1.72 7.57 -52.49 -0.40 1.32 15 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 15 8 N -0.90 -26.82 13.29 55.43 0.74 -26.09 15 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 15 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 13 C -0.13 -2.58 6.09 -25.16 -0.15 -2.73 15 14 C 0.04 0.74 7.64 37.93 0.29 1.03 15 15 O -0.38 -7.30 11.65 -35.23 -0.41 -7.71 15 16 C 0.02 0.39 5.65 37.93 0.21 0.60 15 17 H 0.05 1.09 6.83 -51.93 -0.35 0.73 15 18 H 0.03 0.45 6.84 -51.93 -0.36 0.10 15 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 20 H 0.03 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.02 0.45 6.83 -51.93 -0.35 0.10 15 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.10 2.03 7.32 -51.93 -0.38 1.65 15 24 H 0.08 1.41 8.00 -51.93 -0.42 0.99 15 25 H 0.09 1.28 8.14 -51.93 -0.42 0.85 15 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.05 0.92 7.75 -51.93 -0.40 0.51 15 28 H 0.09 1.67 7.87 -51.93 -0.41 1.26 15 LS Contribution 232.94 15.07 3.51 3.51 Total: -1.00 -30.61 232.94 -4.56 -35.17 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -3.89 Total: -3.03 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 0.86 Total: -10.35 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.76 Total: -15.96 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.61 -4.56 -35.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692815039.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.584 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds