Wall clock time and date at job start Mon Mar 30 2020 02:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99682 * 2 1 4 4 C 1.53008 * 110.45492 * 62.93611 * 3 2 1 5 5 C 1.50695 * 109.46959 * 59.65567 * 4 3 2 6 6 H 1.07995 * 120.00383 * 355.03165 * 5 4 3 7 7 C 1.37880 * 119.99830 * 175.03831 * 5 4 3 8 8 N 1.31515 * 119.99799 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47109 * 89.99836 * 9 7 5 11 11 H 1.48501 * 109.47255 * 209.99802 * 9 7 5 12 12 H 1.48505 * 109.47281 * 330.00041 * 9 7 5 13 13 C 1.54511 * 110.50863 * 185.53719 * 3 2 1 14 14 C 1.54479 * 104.05991 * 118.64751 * 13 3 2 15 15 O 1.44423 * 104.80593 * 23.97692 * 14 13 3 16 16 C 1.44647 * 105.36762 * 319.56702 * 15 14 13 17 17 H 1.09004 * 109.47332 * 294.97305 * 1 2 3 18 18 H 1.09000 * 109.47644 * 54.97573 * 1 2 3 19 19 H 1.09004 * 109.47117 * 174.97517 * 1 2 3 20 20 H 1.08999 * 109.46596 * 179.65333 * 4 3 2 21 21 H 1.08990 * 109.46923 * 299.64935 * 4 3 2 22 22 H 0.96999 * 119.99817 * 180.02562 * 8 7 5 23 23 H 1.08994 * 110.51082 * 237.28861 * 13 3 2 24 24 H 1.09000 * 110.51400 * 0.02562 * 13 3 2 25 25 H 1.08995 * 110.37615 * 142.80894 * 14 13 3 26 26 H 1.09007 * 110.37349 * 265.15016 * 14 13 3 27 27 H 1.08990 * 110.34042 * 281.58887 * 16 15 14 28 28 H 1.09003 * 110.50565 * 159.18059 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6317 2.0593 1.2766 5 6 2.1272 1.2947 2.4769 6 1 2.5874 0.3262 2.3481 7 6 1.9929 1.8315 3.7398 8 7 1.4328 3.0110 3.8967 9 14 2.6065 0.8835 5.2278 10 1 4.0220 1.2441 5.4953 11 1 1.7763 1.2268 6.4103 12 1 2.5089 -0.5741 4.9609 13 6 3.5462 1.2142 -0.1396 14 6 3.8482 1.9603 -1.4582 15 8 2.7303 2.8565 -1.6395 16 6 1.5628 2.0971 -1.2488 17 1 -0.3634 0.4339 0.9316 18 1 -0.3634 0.5898 -0.8415 19 1 -0.3633 -1.0238 -0.0900 20 1 2.0878 3.0492 1.2627 21 1 0.5478 2.1594 1.3316 22 1 1.3386 3.3889 4.7851 23 1 4.0360 1.7083 0.6994 24 1 3.8623 0.1734 -0.2091 25 1 4.7766 2.5246 -1.3709 26 1 3.9079 1.2557 -2.2878 27 1 1.2707 1.4142 -2.0464 28 1 0.7386 2.7653 -0.9993 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692815039.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:07 Heat of formation + Delta-G solvation = -119.407500 kcal Electronic energy + Delta-G solvation = -12079.193126 eV Core-core repulsion = 9901.340216 eV Total energy + Delta-G solvation = -2177.852910 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.91048 -37.92264 -35.15207 -32.80628 -30.63017 -28.71021 -27.50337 -25.01184 -23.37476 -20.93671 -18.65108 -17.69489 -17.21193 -16.63110 -16.14007 -15.60921 -15.49701 -15.11330 -14.45472 -14.04478 -13.38858 -13.25566 -12.82531 -12.71574 -12.39948 -12.24362 -12.17191 -11.91249 -11.47460 -11.13232 -10.76228 -10.57149 -10.12630 -8.19217 -6.27612 1.39161 1.39702 1.51362 2.40425 2.77812 3.13385 3.30574 3.71937 3.97423 4.07841 4.29288 4.41207 4.53560 4.67264 4.71073 4.81361 4.87861 4.93134 4.99629 5.28322 5.35759 5.49808 5.74414 5.82145 6.21805 6.48353 6.86328 7.39944 8.92651 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046134 B = 0.013301 C = 0.012361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.779730 B = 2104.589787 C = 2264.560537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.089 3.911 4 C 0.018 3.982 5 C -0.515 4.515 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.266 1.266 13 C -0.135 4.135 14 C 0.048 3.952 15 O -0.393 6.393 16 C 0.028 3.972 17 H 0.024 0.976 18 H 0.052 0.948 19 H 0.103 0.897 20 H 0.001 0.999 21 H -0.004 1.004 22 H 0.262 0.738 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 -4.666 -8.666 9.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.304 6.304 3 C 0.049 3.951 4 C -0.019 4.019 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.172 4.172 14 C -0.028 4.028 15 O -0.312 6.312 16 C -0.049 4.049 17 H 0.043 0.957 18 H 0.070 0.930 19 H 0.121 0.879 20 H 0.020 0.980 21 H 0.014 0.986 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.126 0.874 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.587 -4.493 -8.619 9.849 hybrid contribution -0.206 -0.056 1.228 1.246 sum 1.381 -4.549 -7.392 8.788 Atomic orbital electron populations 1.22783 0.80902 1.03251 0.99834 1.87814 1.20553 1.27097 1.94908 1.22948 0.94186 0.83394 0.94575 1.19459 0.95177 0.94812 0.92494 1.21362 1.38343 1.03852 0.91730 0.92374 1.25904 0.95697 0.95897 1.02285 1.70094 1.45618 1.18334 1.23499 0.85517 0.78368 0.79123 0.78481 1.19785 1.20886 1.19062 1.22809 0.93250 1.02341 0.98843 1.23604 0.90529 0.92846 0.95784 1.89078 1.16794 1.37701 1.87655 1.24078 0.89505 0.95392 0.95931 0.95698 0.92963 0.87882 0.98041 0.98582 0.92903 0.91044 0.89257 0.87406 0.89996 0.90022 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.35 113.37 1.17 2.16 15 2 O -0.38 -15.77 9.89 -148.98 -1.47 -17.24 15 3 C 0.09 3.74 0.71 -9.78 -0.01 3.73 15 4 C 0.02 0.94 3.53 29.85 0.11 1.04 15 5 C -0.51 -29.21 7.96 25.60 0.20 -29.00 15 6 H 0.06 3.27 7.57 -2.91 -0.02 3.25 15 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 15 8 N -0.93 -57.04 13.29 21.45 0.28 -56.76 15 9 Si 0.96 44.83 29.54 68.60 2.03 46.85 15 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 15 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 13 C -0.13 -5.09 6.09 31.61 0.19 -4.90 15 14 C 0.05 1.49 7.64 72.48 0.55 2.05 15 15 O -0.39 -14.57 11.65 -148.98 -1.74 -16.30 15 16 C 0.03 1.01 5.65 72.48 0.41 1.42 15 17 H 0.02 0.99 6.83 -2.39 -0.02 0.97 15 18 H 0.05 1.54 6.84 -2.39 -0.02 1.53 15 19 H 0.10 2.88 8.14 -2.38 -0.02 2.86 15 20 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 21 H 0.00 -0.23 6.83 -2.39 -0.02 -0.24 15 22 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 23 H 0.07 3.02 7.32 -2.39 -0.02 3.00 15 24 H 0.09 3.11 8.00 -2.39 -0.02 3.09 15 25 H 0.11 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.08 2.07 8.14 -2.38 -0.02 2.05 15 27 H 0.08 2.52 7.75 -2.39 -0.02 2.51 15 28 H 0.09 3.12 7.87 -2.39 -0.02 3.10 15 Total: -1.00 -65.64 232.94 3.32 -62.31 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.13 Total: 4.21 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 3.09 Total: -23.07 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -3.21 Total: -33.54 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.64 3.32 -62.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692815039.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.095 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds