Wall clock time and date at job start Mon Mar 30 2020 02:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.56816 * 2 1 4 4 C 1.54486 * 110.51000 * 237.32284 * 2 1 3 5 5 O 1.44423 * 104.80574 * 265.33632 * 4 2 1 6 6 C 1.44423 * 105.27493 * 319.48535 * 5 4 2 7 7 C 1.54480 * 104.80156 * 40.51257 * 6 5 4 8 8 H 1.08995 * 110.62969 * 94.72603 * 7 6 5 9 9 O 1.42901 * 110.51191 * 217.37726 * 7 6 5 10 10 C 1.42905 * 114.00134 * 264.64318 * 9 7 6 11 11 C 1.50703 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99574 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 H 1.09002 * 109.46404 * 297.31393 * 1 2 3 20 20 H 1.08999 * 109.47122 * 57.31372 * 1 2 3 21 21 H 1.08995 * 109.47137 * 177.32130 * 1 2 3 22 22 H 1.09005 * 110.36900 * 24.16558 * 4 2 1 23 23 H 1.09000 * 110.37324 * 146.38664 * 4 2 1 24 24 H 1.09000 * 110.37360 * 281.68497 * 6 5 4 25 25 H 1.08994 * 110.37334 * 159.34524 * 6 5 4 26 26 H 1.09001 * 109.47103 * 300.00246 * 10 9 7 27 27 H 1.09004 * 109.47054 * 59.99750 * 10 9 7 28 28 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 2.3069 -2.1177 -0.7240 6 6 2.8757 -1.9424 0.5918 7 6 2.0714 -0.7815 1.2179 8 1 1.2492 -1.1657 1.8214 9 8 2.9244 0.0499 2.0074 10 6 2.9275 -0.2755 3.3989 11 6 3.8559 0.6587 4.1312 12 1 4.3905 1.4241 3.5882 13 6 4.0229 0.5363 5.4943 14 7 3.3722 -0.3961 6.1554 15 14 5.1743 1.6938 6.4020 16 1 5.7814 2.6453 5.4371 17 1 4.4100 2.4491 7.4270 18 1 6.2463 0.9075 7.0636 19 1 -0.3632 0.4716 0.9131 20 1 -0.3633 0.5550 -0.8649 21 1 -0.3633 -1.0265 -0.0480 22 1 1.3310 -0.7973 -2.0179 23 1 3.0012 -0.3360 -1.5715 24 1 3.9301 -1.6764 0.5171 25 1 2.7535 -2.8504 1.1822 26 1 1.9185 -0.1726 3.7984 27 1 3.2675 -1.3026 3.5311 28 1 3.4900 -0.4824 7.1143 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703535006.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:49 Heat of formation + Delta-G solvation = -105.757537 kcal Electronic energy + Delta-G solvation = -11566.017104 eV Core-core repulsion = 9388.756101 eV Total energy + Delta-G solvation = -2177.261003 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.36039 -36.18275 -33.03860 -32.46960 -28.70637 -26.99601 -26.02120 -22.73036 -21.77502 -20.09822 -16.64377 -16.37734 -15.74646 -15.10520 -14.75899 -14.29252 -13.59768 -13.17314 -13.01849 -12.36211 -12.16524 -11.78974 -11.44290 -11.10310 -10.81800 -10.70870 -10.60915 -10.31993 -9.98408 -9.55217 -9.15522 -8.84868 -8.21409 -6.15541 -4.17823 3.26601 3.33200 3.39470 4.16118 4.34671 4.69724 4.95074 5.08287 5.20831 5.28014 5.50616 5.65456 5.72534 5.85444 5.92272 6.01420 6.17914 6.18652 6.28849 6.41546 6.96773 7.08826 7.35576 7.75097 8.09151 8.49620 8.95204 9.47417 10.95950 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.072573 B = 0.008583 C = 0.008433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.727910 B = 3261.294648 C = 3319.530652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.051 3.949 5 O -0.379 6.379 6 C 0.024 3.976 7 C 0.062 3.938 8 H 0.068 0.932 9 O -0.382 6.382 10 C 0.193 3.807 11 C -0.517 4.517 12 H 0.067 0.933 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.007 0.993 27 H 0.006 0.994 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 -0.427 -10.122 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 H 0.113 0.887 4 C -0.026 4.026 5 O -0.298 6.298 6 C -0.053 4.053 7 C 0.002 3.998 8 H 0.086 0.914 9 O -0.302 6.302 10 C 0.119 3.881 11 C -0.555 4.555 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.109 0.891 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.579 -0.549 -10.118 10.746 hybrid contribution 0.465 0.467 0.913 1.126 sum -3.113 -0.082 -9.204 9.717 Atomic orbital electron populations 1.21778 0.94063 1.01881 1.01908 1.22583 0.96435 1.01293 0.94558 0.88736 1.23423 0.99819 0.83148 0.96193 1.89055 1.83360 1.25939 1.31484 1.24007 0.98250 0.99593 0.83456 1.23306 0.93112 0.90697 0.92692 0.91394 1.87922 1.64441 1.55863 1.21949 1.20311 0.96659 0.96143 0.75010 1.21088 1.25744 1.16495 0.92177 0.91452 1.24954 0.96349 0.95971 0.97179 1.69971 1.42159 1.32966 1.08577 0.86272 0.80257 0.80467 0.79466 1.19456 1.20798 1.20782 0.92136 0.92559 0.92426 0.89429 0.92320 0.91232 0.89141 0.97516 0.97570 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.94 37.16 0.33 -1.50 15 2 C -0.13 -2.03 3.53 -89.05 -0.31 -2.34 15 3 H 0.09 1.52 8.00 -51.93 -0.42 1.10 15 4 C 0.05 0.72 7.18 37.94 0.27 0.99 15 5 O -0.38 -6.36 11.65 -35.23 -0.41 -6.78 15 6 C 0.02 0.42 7.38 37.93 0.28 0.70 15 7 C 0.06 1.18 3.26 -25.16 -0.08 1.10 15 8 H 0.07 1.30 7.41 -51.93 -0.38 0.92 15 9 O -0.38 -9.17 9.96 -35.23 -0.35 -9.52 15 10 C 0.19 5.25 5.53 36.01 0.20 5.45 15 11 C -0.52 -15.14 9.43 -34.44 -0.32 -15.47 15 12 H 0.07 1.96 7.81 -52.49 -0.41 1.55 15 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 14 N -0.90 -26.71 13.29 55.43 0.74 -25.97 15 15 Si 0.91 21.70 29.54 -169.99 -5.02 16.67 15 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 19 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.09 1.02 7.87 -51.93 -0.41 0.61 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.07 1.26 8.08 -51.93 -0.42 0.84 15 25 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 26 H 0.01 0.20 8.11 -51.93 -0.42 -0.22 15 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 15 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 LS Contribution 240.91 15.07 3.63 3.63 Total: -1.00 -30.65 240.91 -5.28 -35.93 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -4.13 Total: -4.43 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 0.27 Total: -9.53 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.76 Total: -16.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.65 -5.28 -35.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703535006.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.829 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds